diff --git a/BioArchLinux/r-hardhat/PKGBUILD b/BioArchLinux/r-hardhat/PKGBUILD index 3ef53ad487..41bc3559f2 100644 --- a/BioArchLinux/r-hardhat/PKGBUILD +++ b/BioArchLinux/r-hardhat/PKGBUILD @@ -4,13 +4,14 @@ _pkgname=hardhat _pkgver=1.3.0 pkgname=r-${_pkgname,,} pkgver=1.3.0 -pkgrel=1 +pkgrel=2 pkgdesc='Construct Modeling Packages' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" license=('MIT') depends=( r + r-cli r-glue r-rlang r-tibble diff --git a/BioArchLinux/r-hardhat/lilac.yaml b/BioArchLinux/r-hardhat/lilac.yaml index 0a48fe9887..06f2109cb8 100644 --- a/BioArchLinux/r-hardhat/lilac.yaml +++ b/BioArchLinux/r-hardhat/lilac.yaml @@ -3,6 +3,7 @@ maintainers: - github: starsareintherose email: kuoi@bioarchlinux.org repo_depends: +- r-cli - r-glue - r-rlang - r-tibble diff --git a/BioArchLinux/r-loo/PKGBUILD b/BioArchLinux/r-loo/PKGBUILD index 8722f4b0e7..202547b42f 100644 --- a/BioArchLinux/r-loo/PKGBUILD +++ b/BioArchLinux/r-loo/PKGBUILD @@ -8,7 +8,7 @@ _pkgname=loo _pkgver=2.5.1 pkgname=r-${_pkgname,,} pkgver=2.5.1 -pkgrel=6 +pkgrel=7 pkgdesc='Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" @@ -25,6 +25,7 @@ optdepends=( r-ggplot2 r-graphics r-knitr + r-posterior r-rmarkdown r-rstan r-rstanarm diff --git a/BioArchLinux/r-msstats/PKGBUILD b/BioArchLinux/r-msstats/PKGBUILD index 923d53544a..bc7e3ce33d 100644 --- a/BioArchLinux/r-msstats/PKGBUILD +++ b/BioArchLinux/r-msstats/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=MSstats _pkgver=4.6.3 pkgname=r-${_pkgname,,} pkgver=4.6.3 -pkgrel=1 +pkgrel=2 pkgdesc='Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" @@ -23,6 +23,7 @@ depends=( r-preprocesscore r-rcpp r-rcpparmadillo + r-statmod ) optdepends=( r-biocstyle diff --git a/BioArchLinux/r-msstats/lilac.yaml b/BioArchLinux/r-msstats/lilac.yaml index 4475711675..1dd7698459 100644 --- a/BioArchLinux/r-msstats/lilac.yaml +++ b/BioArchLinux/r-msstats/lilac.yaml @@ -15,6 +15,7 @@ repo_depends: - r-preprocesscore - r-rcpp - r-rcpparmadillo +- r-statmod update_on: - regex: MSstats_([\d._-]+).tar.gz source: regex diff --git a/BioArchLinux/r-recountmethylation/PKGBUILD b/BioArchLinux/r-recountmethylation/PKGBUILD index cc0116405a..40772a53b5 100644 --- a/BioArchLinux/r-recountmethylation/PKGBUILD +++ b/BioArchLinux/r-recountmethylation/PKGBUILD @@ -4,21 +4,23 @@ _pkgname=recountmethylation _pkgver=1.8.3 pkgname=r-${_pkgname,,} pkgver=1.8.3 -pkgrel=1 +pkgrel=2 pkgdesc='Access and analyze DNA methylation database compilations' arch=('any') url="https://bioconductor.org/packages/${_pkgname}" license=('Artistic2.0') depends=( r + r-basilisk r-biocfilecache + r-delayedmatrixstats r-hdf5array r-minfi r-r.utils r-rcurl + r-reticulate r-rhdf5 r-s4vectors - r-illuminahumanmethylation450kmanifest ) optdepends=( r-annotationhub @@ -29,6 +31,7 @@ optdepends=( r-gridextra r-knitr r-limma + r-minfidata r-rmarkdown r-testthat ) diff --git a/BioArchLinux/r-recountmethylation/lilac.yaml b/BioArchLinux/r-recountmethylation/lilac.yaml index 05f4eaeaf0..79b3ea77ea 100644 --- a/BioArchLinux/r-recountmethylation/lilac.yaml +++ b/BioArchLinux/r-recountmethylation/lilac.yaml @@ -3,14 +3,16 @@ maintainers: - github: starsareintherose email: kuoi@bioarchlinux.org repo_depends: +- r-basilisk - r-biocfilecache +- r-delayedmatrixstats - r-hdf5array - r-minfi - r-r.utils - r-rcurl +- r-reticulate - r-rhdf5 - r-s4vectors -- r-illuminahumanmethylation450kmanifest update_on: - regex: recountmethylation_([\d._-]+).tar.gz source: regex diff --git a/BioArchLinux/r-scfa/PKGBUILD b/BioArchLinux/r-scfa/PKGBUILD index 3094f15194..369dafb74c 100644 --- a/BioArchLinux/r-scfa/PKGBUILD +++ b/BioArchLinux/r-scfa/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=SCFA _pkgver=1.8.1 pkgname=r-${_pkgname,,} pkgver=1.8.1 -pkgrel=1 +pkgrel=2 pkgdesc='SCFA: Subtyping via Consensus Factor Analysis' arch=('any') url="https://bioconductor.org/packages/${_pkgname}" @@ -12,7 +12,6 @@ license=('LGPL') depends=( r r-biocparallel - r-clustercrit r-coro r-glmnet r-igraph diff --git a/BioArchLinux/r-scfa/lilac.yaml b/BioArchLinux/r-scfa/lilac.yaml index 5da83908ce..c18e0990c9 100644 --- a/BioArchLinux/r-scfa/lilac.yaml +++ b/BioArchLinux/r-scfa/lilac.yaml @@ -4,7 +4,6 @@ maintainers: email: kuoi@bioarchlinux.org repo_depends: - r-biocparallel -- r-clustercrit - r-coro - r-glmnet - r-igraph