mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
6041770dd1
commit
c567331d0b
24 changed files with 170 additions and 146 deletions
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@ -3,12 +3,12 @@
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_pkgname=BADER
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_pkgver=1.40.0
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pkgname=r-${_pkgname,,}
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pkgver=1.40.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Bayesian Analysis of Differential Expression in RNA Sequencing Data'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Bayesian Analysis of Differential Expression in RNA Sequencing Data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r
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)
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@ -16,14 +16,15 @@ optdepends=(
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r-pasilla
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('d597dfa44e9c0dffc8bae73cced5b21bfeea76fb7523f2d84bd36a4e8f3aae7e')
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md5sums=('10d4e5e231ff178df7922078024f9d89')
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b2sums=('6a606f37c1030404208913db504f22877c1f13095c78fbe6e2928a9763134f990f3371a95f12972200baf143dbe3ecdc7660a372e4359c2b92f483dc4e4886e1')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: BADER_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/BADER
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- source: rpkgs
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pkgname: BADER
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repo: bioc
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=BHC
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_pkgver=1.54.0
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pkgname=r-${_pkgname,,}
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pkgver=1.54.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Bayesian Hierarchical Clustering'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Bayesian Hierarchical Clustering"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('c1bba8450c9bf689949f944694afc6f65e7ff8afedd7f24a68271ebd124e48d4')
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md5sums=('855087c8854bd3014111477e1c3cdcb9')
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b2sums=('8618c469025c895d42d5e6cd12099b8e25ec6b77b0e56371987d88bdece28d36248435d2ff7e748e08862fa74c4d30b8d41dd6a66fc335f6faf91b434ef76ae4')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
|
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: BHC_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/BHC
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- source: rpkgs
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pkgname: BHC
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repo: bioc
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md5: true
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- alias: r
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@ -3,12 +3,12 @@
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_pkgname=calm
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_pkgver=1.16.0
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pkgname=r-${_pkgname,,}
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pkgver=1.16.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Covariate Assisted Large-scale Multiple testing'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Covariate Assisted Large-scale Multiple testing"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r
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)
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@ -17,14 +17,15 @@ optdepends=(
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r-rmarkdown
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('db9d2c3f5b53c0bca13351fae104aac9177c35ccf0c7fc6fcd4f38082342028c')
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md5sums=('9a2b4c48021193636c88c997331ede2d')
|
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b2sums=('220688663275c68e39e6fbe7fef558da6e6761d067aef930d91a6e802c4fbcbdebea81366aa838355ee08956e330789b8337afe1359879f032d0fdf5c2c610f1')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
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from lilac_r_utils import r_pre_build
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|
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def pre_build():
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for line in edit_file('PKGBUILD'):
|
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: calm_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/calm
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- source: rpkgs
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pkgname: calm
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repo: bioc
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=CFAssay
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_pkgver=1.36.0
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pkgname=r-${_pkgname,,}
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pkgver=1.36.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Statistical analysis for the Colony Formation Assay'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('LGPL')
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pkgdesc="Statistical analysis for the Colony Formation Assay"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('LGPL-2.0-or-later')
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depends=(
|
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r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
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sha256sums=('44a819139501cf2bee863a9d0a0e624f19c9a3e0a2cc6755f2020a7e886e133a')
|
||||
md5sums=('122c969248ffd92330d93a266db6cb3c')
|
||||
b2sums=('53dae0fb1b19bb5e90cc870ed8226c2a97449d73e186e2f79bd45272d615d45d50f77dc26dcc15c9cd7e58f75d2d5c2d410c7af91a5dc75dc2ca6ffbd39aa02c')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
|
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: CFAssay_([\d._-]+).tar.gz
|
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source: regex
|
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url: https://bioconductor.org/packages/CFAssay
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- source: rpkgs
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pkgname: CFAssay
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repo: bioc
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md5: true
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- alias: r
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@ -3,12 +3,12 @@
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_pkgname=chopsticks
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_pkgver=1.68.0
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pkgname=r-${_pkgname,,}
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pkgver=1.68.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="The 'snp.matrix' and 'X.snp.matrix' Classes"
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r
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)
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@ -16,14 +16,15 @@ optdepends=(
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r-hexbin
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('5fe024c809302807edf170ad1108e25519b240415c25a7a2efb8584e91e0880b')
|
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md5sums=('b63b111068a6d42f7812010d1dc31047')
|
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b2sums=('cb710bc38ba57bc9ecb7e9e81ff0dbcf8e1fe1fca33f22546a3a04c3771bdde027984a8dc443cc146ef8ac7e2ebe362e76cf4db896b18ab6a44f0c656adf611a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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|
|
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|||
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|
@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
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||||
update_on:
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||||
- regex: chopsticks_([\d._-]+).tar.gz
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source: regex
|
||||
url: https://bioconductor.org/packages/chopsticks
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- source: rpkgs
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pkgname: chopsticks
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repo: bioc
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md5: true
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- alias: r
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|
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@ -3,24 +3,25 @@
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_pkgname=cisPath
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_pkgver=1.42.0
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pkgname=r-${_pkgname,,}
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pkgver=1.42.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Visualization and management of the protein-protein interaction networks.'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Visualization and management of the protein-protein interaction networks"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-or-later')
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depends=(
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||||
r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('16419352d21278d62543ff2de4be4fbc30575ef2feaa4812a488f9bf5556b603')
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md5sums=('958a35281b9aa98b2d5c3a5c4e9c8824')
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b2sums=('6c481e29e057a916b9302de8e6027926d12bf449eedf8f10a192e34397eff5091c1e8efbcde5e831fe08d25327e30592f5d43502f076b7d54db1f513756d56d5')
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build() {
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||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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||||
mkdir build
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||||
R CMD INSTALL -l build "$_pkgname"
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||||
}
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||||
|
||||
package() {
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||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
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||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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||||
# vim:set ts=2 sw=2 et:
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|
|
|
|||
|
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@ -1,12 +1,13 @@
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|||
#!/usr/bin/env python3
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||||
from lilaclib import *
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||||
|
||||
import os
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||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: cisPath_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/cisPath
|
||||
- source: rpkgs
|
||||
pkgname: cisPath
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,12 +3,12 @@
|
|||
_pkgname=coGPS
|
||||
_pkgver=1.46.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.46.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='cancer outlier Gene Profile Sets'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="cancer outlier Gene Profile Sets"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
|
|
@ -16,14 +16,15 @@ optdepends=(
|
|||
r-limma
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a7d77ed813ee2901ad1504856720f0735aabf19e76b95edf99a3da6c911a1752')
|
||||
md5sums=('a824d8a41fee47628eb7f369adef4a2c')
|
||||
b2sums=('93638d4629abbc5660873ef47fe7c49025cfa8dc8d3bde46631c7c96b014a382560a6e5f7be643d6a0ef622d90cf32de3eed9cdcd82808b06898004b218ef4f6')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: coGPS_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/coGPS
|
||||
- source: rpkgs
|
||||
pkgname: coGPS
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,12 +3,12 @@
|
|||
_pkgname=comprehenr
|
||||
_pkgver=0.6.10
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=0.6.10
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=3
|
||||
pkgdesc='List Comprehensions'
|
||||
arch=('any')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="List Comprehensions"
|
||||
arch=(any)
|
||||
url="https://cran.r-project.org/package=$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
|
|
@ -18,14 +18,15 @@ optdepends=(
|
|||
r-tinytest
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('5c08efe824278b086a9f45823b2239206b3190e463c607d3ebb690cab5018cf2')
|
||||
md5sums=('02f3c79d161b77c46295adda537a9ade')
|
||||
b2sums=('808cc93182286ed4f0de2002c4537d5887dbceb2dc8f55ad6d61e2b739f618f529791915b603c49da478bf5eaec4062c7a8f6d18a96918c8e9fec59ac5c13539')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -1,9 +1,10 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: sukanka
|
||||
email: su975853527@gmail.com
|
||||
- github: sukanka
|
||||
email: su975853527@gmail.com
|
||||
update_on:
|
||||
- regex: comprehenr_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=comprehenr
|
||||
- alias: r
|
||||
- source: rpkgs
|
||||
pkgname: comprehenr
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue