sdsl-lite: add version 2.3.1

BioArchLinux/nodejs-d3/LICENSE

@@ -0,0 +1,13 @@
+Copyright 2010-2023 Mike Bostock
+
+Permission to use, copy, modify, and/or distribute this software for any purpose
+with or without fee is hereby granted, provided that the above copyright notice
+and this permission notice appear in all copies.
+
+THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
+REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
+FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
+INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
+OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
+TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF
+THIS SOFTWARE.

BioArchLinux/nodejs-d3/PKGBUILD

@@ -0,0 +1,29 @@
+# Maintainer: Filipe Bertelli <filipebertelli@tutanota.com>
+# Contributor: Bipin Kumar <kbipinkumar@pm.me>
+
+_pkgbase=d3
+pkgname=nodejs-$_pkgbase
+pkgdesc='Bring data to life with SVG, Canvas and HTML'
+pkgver=7.8.4
+pkgrel=1
+arch=('any')
+url='https://github.com/d3/d3'
+license=('ISC')
+depends=('nodejs' 'bash')
+makedepends=('npm')
+source=("http://registry.npmjs.org/$_pkgbase/-/$_pkgbase-$pkgver.tgz"
+        'LICENSE')
+sha512sums=('ab65874ad761881b43f033268433f22665d4c6be955919e02b2889e447d73313f0fada93e8184d8e1259e30dc11ec366dd0a157d92d8f0eaeafea3c5733c0a44'
+            '4f26a005ba15bf0dd1b9087992a21cfcccb1c21de872df42d98dbb81542ed0c14bf7f04b80554169efc5ec689ee7da89402dfd3031482238b1ef9cda6ec1b070')
+noextract=($_pkgbase-$pkgver.tgz)
+
+package() {
+  npm install -g --user root --prefix "$pkgdir"/usr "$srcdir"/$_pkgbase-$pkgver.tgz
+  install -Dm644 "${srcdir}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  rm -fr "$pkgdir"/usr/etc
+  chown -R root:root "${pkgdir}"
+
+  # Fix npm derp
+  find "$pkgdir/usr" -type d -exec chmod 755 '{}' +
+}
+

BioArchLinux/nodejs-d3/lilac.yaml

@@ -0,0 +1,15 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: kbipinkumar
+    email: kbipinkumar@pm.me
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+update_on:
+  - source: github
+    github: d3/d3
+    use_max_tag: true
+    prefix: 'v'
+    

BioArchLinux/sdsl-lite/CMakeLists.patch

@@ -0,0 +1,30 @@
+--- a/CMakeLists.txt	2023-05-27 20:49:20.443054336 +0530
++++ b/CMakeLists.txt	2023-05-27 20:54:26.158151939 +0530
+@@ -79,18 +79,7 @@
+   endif()
+ endif()
+ 
+-include(CheckSSE4_2)
+-if( BUILTIN_POPCNT )
+-  if( CMAKE_COMPILER_IS_GNUCXX )
+-    append_cxx_compiler_flags("-msse4.2 -march=native" "GCC" CMAKE_CXX_OPT_FLAGS)
+-  endif()
+-  if( CMAKE_COMPILER_IS_GNUCXX )
+-    append_cxx_compiler_flags("-msse4.2 -march=native" "CLANG" CMAKE_CXX_OPT_FLAGS)
+-  endif()
+-  if( CMAKE_COMPILER_IS_INTEL )
+-    append_cxx_compiler_flags("-msse4.2 -march=native" "INTEL" CMAKE_CXX_FLAGS)
+-  endif()
+-endif()
++include(GNUInstallDirs)
+ 
+ # check for demangle support to get pretty C++ class names
+ include(FindCxaDemangle)
+@@ -115,7 +104,6 @@
+     message(WARNING "git not found. Cloning of submodules will not work.")
+ endif()
+ 
+-add_subdirectory(external)
+ add_subdirectory(include)
+ add_subdirectory(lib)
+ 

BioArchLinux/sdsl-lite/PKGBUILD

@@ -0,0 +1,60 @@
+# Maintainer: Bipin Kumar <kbipinkumar@pm.me>
+# Contributor: alienzj <lovelornpig@gmail.com>
+
+pkgname=sdsl-lite
+_packager=vgteam
+pkgver=2.3.1
+pkgrel=1
+pkgdesc="Succinct Data Structure Library"
+arch=('i686' 'x86_64')
+url="https://github.com/vgteam/sdsl-lite"
+license=('GPL')
+depends=(
+        'libdivsufsort'
+        'nodejs-d3'
+        'glibc'
+        'gcc-libs'
+)
+makedepends=('cmake' 'quilt' 'doxygen')
+source=("${pkgname}-${pkgver}.tar.gz::https://github.com/vgteam/sdsl-lite/archive/refs/tags/v${pkgver}-vgteam.tar.gz"
+        'CMakeLists.patch'
+        'sdsl.CMakeLists.patch'
+        'lib.CMakeLists.patch'
+        'use_packaged_d3.patch'
+        'series'
+)
+
+sha256sums=('1c41164a3c59ee3061e0b96cbc30dd43c55d45a03124ab4eac68bacd85c0a2c4'
+            '20aa5f3270afc1a0fa3bc65fdfa044927a6501e4e10e49341cf3cb1ed2103680'
+            'f7fa43df06965e9979e182c8a2784cf8efa288563ab794459a952a2614d606db'
+            '363104f6a8f908d0ba1cbbe7f0cd66d4134f54e08e661aef936745341fcef98a'
+            'b2707f3256e886cffb29ed67e54f9b8d9c8a0882617b377d07b011a2ff043b74'
+            'ffa04f5862ec24eed43d5b39f4f5f793420b0e0587e3847de5351e656c376c0b')
+
+
+prepare() {
+  mkdir -p "$pkgname-$pkgver-${_packager}"/patches
+  cp *.patch "$pkgname-$pkgver-${_packager}"/patches
+  cp series "$pkgname-$pkgver-${_packager}"/patches
+  cd "$pkgname-$pkgver-${_packager}"
+  if [[ -d build ]]; then
+      rm -rf build
+  fi
+  quilt push -a
+}
+
+build() {
+
+  cmake -B build -S "$pkgname-$pkgver-${_packager}" \
+        -DCMAKE_BUILD_TYPE='None' \
+        -DCMAKE_INSTALL_PREFIX='/usr' \
+        -DBUILD_DIVSUFSORT64='OFF' \
+        -Wno-dev
+    cmake --build build
+}
+
+
+package() {
+  DESTDIR="$pkgdir" cmake --install build
+
+}

BioArchLinux/sdsl-lite/lib.CMakeLists.patch

@@ -0,0 +1,26 @@
+--- a/lib/CMakeLists.txt	2023-05-27 21:06:55.542350897 +0530
++++ b/lib/CMakeLists.txt	2023-05-27 21:09:37.299330628 +0530
+@@ -1,6 +1,5 @@
+ include_directories(#"${CMAKE_CURRENT_SOURCE_DIR}/../include"
+         "${CMAKE_CURRENT_BINARY_DIR}/../include"
+-        "${CMAKE_CURRENT_BINARY_DIR}/../external/libdivsufsort/include"
+         )
+ 
+ 
+@@ -11,12 +10,13 @@
+ 
+ set( sdsl_SRCS ${libFiles} ${headerFiles})
+ 
+-add_library( sdsl ${sdsl_SRCS} )
++add_library( sdsl_static ${sdsl_SRCS} )
++add_library( sdsl SHARED ${sdsl_SRCS} )
+ 
+ install(TARGETS sdsl
+         RUNTIME DESTINATION bin
+-        LIBRARY DESTINATION lib
+-        ARCHIVE DESTINATION lib)
++        LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"
++        ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}")
+         
+ math(EXPR SOVERSION "${LIBRARY_VERSION_MAJOR}+1")
+ 

BioArchLinux/sdsl-lite/lilac.yaml

@@ -0,0 +1,17 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: kbipinkumar
+    email: kbipinkumar@pm.me
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.removeprefix('v').removesuffix(-vgteam))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+repo_depends:
+  - nodejs-d3
+  - libdivsufsort
+update_on:
+  - source: github
+    github: vgteam/sdsl-lite
+    use_latest_release: true
+    prefix: 'v'

BioArchLinux/sdsl-lite/sdsl.CMakeLists.patch

@@ -0,0 +1,11 @@
+--- a/include/sdsl/CMakeLists.txt	2023-05-27 21:01:34.624907551 +0530
++++ b/include/sdsl/CMakeLists.txt	2023-05-27 21:03:45.869781987 +0530
+@@ -11,7 +11,7 @@
+ 
+ foreach(hppFile ${hppFiles}) # copy each file
+ 	configure_file( "${CMAKE_CURRENT_SOURCE_DIR}/${hppFile}" "${CMAKE_CURRENT_BINARY_DIR}/${hppFile}" COPYONLY ) 
+-	install(FILES "${CMAKE_CURRENT_BINARY_DIR}/${hppFile}" DESTINATION include/sdsl)
++	install(FILES "${CMAKE_CURRENT_BINARY_DIR}/${hppFile}" DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/sdsl")
+ #	MESSAGE(${hppFile})
+ endforeach(hppFile)
+ 

BioArchLinux/sdsl-lite/series

@@ -0,0 +1,5 @@
+CMakeLists.patch
+sdsl.CMakeLists.patch
+lib.CMakeLists.patch
+use_packaged_d3.patch
+

BioArchLinux/sdsl-lite/use_packaged_d3.patch

@@ -0,0 +1,13 @@
+Description: Use d3.min.js from nodejs-d3
+
+--- a/lib/structure_tree.cpp.cmake	2023-05-27 21:06:55.545684100 +0530
++++ b/lib/structure_tree.cpp.cmake	2023-05-27 21:14:52.420258448 +0530
+@@ -45,7 +45,7 @@
+             << "   <head>\n"
+             << "    <meta http-equiv=\"Content-Type\" content=\"text/html;charset=utf-8\">\n"
+             << "    <title>" << file_name << "</title>\n"
+-            << "    <script src=\"file://@PROJECT_SOURCE_DIR@/external/d3/d3.min.js\"></script>"
++            << "    <script src=\"file:///usr/lib/node_modules/d3/dist/d3.min.js\"></script>"
+             << "    <script src=\"http://d3js.org/d3.v2.js\"></script>\n"
+             << "    <style type=\"text/css\">\n"
+             << "      path { stroke: #000; stroke-width: 0.8; cursor: pointer; }\n"