diff --git a/fail/r-rgin/PKGBUILD b/BioArchLinux/r-rgin/PKGBUILD similarity index 66% rename from fail/r-rgin/PKGBUILD rename to BioArchLinux/r-rgin/PKGBUILD index 5432647e28..3b095fe497 100644 --- a/fail/r-rgin/PKGBUILD +++ b/BioArchLinux/r-rgin/PKGBUILD @@ -21,13 +21,21 @@ optdepends=( source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('b0cbde4bdb9f19dcbc1d745efcc5eebaa853ef767b7f338eefbc74d84aa4dbbf') +prepare() { + sed -i 's#PKG_CXXFLAGS = #PKG_CXXFLAGS = -I/usr/lib/R/library/Rcpp/include #' "${_pkgname}/src/Makevars" + tar cfz "${_pkgname}.tar.gz" "${_pkgname}" +} + build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + #R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + R CMD INSTALL ${_pkgname}.tar.gz -l "${srcdir}" } package() { install -dm0755 "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + # delete unneeded object files + find "${pkgdir}/usr/lib/R/library/${_pkgname}" -type f -name "*.o" -delete } # vim:set ts=2 sw=2 et: diff --git a/fail/r-rgin/lilac.py b/BioArchLinux/r-rgin/lilac.py similarity index 100% rename from fail/r-rgin/lilac.py rename to BioArchLinux/r-rgin/lilac.py diff --git a/fail/r-rgin/lilac.yaml b/BioArchLinux/r-rgin/lilac.yaml similarity index 100% rename from fail/r-rgin/lilac.yaml rename to BioArchLinux/r-rgin/lilac.yaml