From c9a7ef823ce84c66c40de5fbeb383d11635be4fb Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Mon, 11 Mar 2024 15:56:42 +0200
Subject: [PATCH] r-nmi: use metadata checks

---
 BioArchLinux/r-hdci/lilac.py      |  5 +----
 BioArchLinux/r-nmi/PKGBUILD       | 21 +++++++++++----------
 BioArchLinux/r-nmi/lilac.py       | 11 ++++++-----
 BioArchLinux/r-nmi/lilac.yaml     |  7 ++++---
 lilac-extensions/lilac_r_utils.py |  1 +
 5 files changed, 23 insertions(+), 22 deletions(-)

diff --git a/BioArchLinux/r-hdci/lilac.py b/BioArchLinux/r-hdci/lilac.py
index 28898ccd1b..b5cdb057c5 100644
--- a/BioArchLinux/r-hdci/lilac.py
+++ b/BioArchLinux/r-hdci/lilac.py
@@ -7,10 +7,7 @@ sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
 from lilac_r_utils import r_pre_build
 
 def pre_build():
-    r_pre_build(
-        _G,
-        expect_license = "GNU General Public License version 2",
-    )
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()
diff --git a/BioArchLinux/r-nmi/PKGBUILD b/BioArchLinux/r-nmi/PKGBUILD
index 6e4bee2623..0c81946c8f 100644
--- a/BioArchLinux/r-nmi/PKGBUILD
+++ b/BioArchLinux/r-nmi/PKGBUILD
@@ -3,24 +3,25 @@
 _pkgname=NMI
 _pkgver=2.0
 pkgname=r-${_pkgname,,}
-pkgver=2.0
+pkgver=${_pkgver//-/.}
 pkgrel=6
-pkgdesc='Normalized Mutual Information of Community Structure in Network'
-arch=('any')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+pkgdesc="Normalized Mutual Information of Community Structure in Network"
+arch=(any)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-2.0-only')
 depends=(
   r
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('c39fd733944601dd314dc37a4b0332d374236aa2bb21f263833f79989387b7e7')
+md5sums=('4c7ff8b6dc4834b2cfbe0b8cc9b5d88a')
+b2sums=('828166b2e3d94f5238e9c20bef3cada33d7b48ac2c23e39ead02066c48d6cc1e8d119f39c311162a02c39257ecd47a15a28af65a6e46e61c3220250d7745cd99')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:
diff --git a/BioArchLinux/r-nmi/lilac.py b/BioArchLinux/r-nmi/lilac.py
index bd219c037c..b5cdb057c5 100644
--- a/BioArchLinux/r-nmi/lilac.py
+++ b/BioArchLinux/r-nmi/lilac.py
@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()
diff --git a/BioArchLinux/r-nmi/lilac.yaml b/BioArchLinux/r-nmi/lilac.yaml
index 72a0ad5a84..b762b8bd5d 100644
--- a/BioArchLinux/r-nmi/lilac.yaml
+++ b/BioArchLinux/r-nmi/lilac.yaml
@@ -3,7 +3,8 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: NMI_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=NMI
+- source: rpkgs
+  pkgname: NMI
+  repo: cran
+  md5: true
 - alias: r
diff --git a/lilac-extensions/lilac_r_utils.py b/lilac-extensions/lilac_r_utils.py
index 91e4b672ee..97eee2a8ed 100644
--- a/lilac-extensions/lilac_r_utils.py
+++ b/lilac-extensions/lilac_r_utils.py
@@ -201,6 +201,7 @@ license_map = {
     "CC0": "CC0-1.0",
     "CeCILL": "CECILL-2.0",
     "EPL": "EPL",
+    "GNU General Public License version 2": "GPL-2.0-only",
     "GPL": "GPL-2.0-or-later",
     "GPL (>= 2)": "GPL-2.0-or-later",
     "GPL (>= 2.0)": "GPL-2.0-or-later",