r-rstan: fix depends, use metadata checks

BioArchLinux/r-rstan/PKGBUILD

@@ -1,58 +1,64 @@
-# system requirements: GNU make, pandoc
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 # Contributor: Robert Greener <me@r0bert.dev>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 # Contributor: Ward Segers <w@rdsegers.be>
 # Contributor: Alex Branham <alex.branham@gmail.com>
 
 _pkgname=rstan
-_pkgver=2.21.8
+_pkgver=2.26.23
 pkgname=r-${_pkgname,,}
-pkgver=2.21.8
-pkgrel=2
-pkgdesc='R Interface to Stan'
-arch=('x86_64')
+pkgver=${_pkgver//-/.}
+pkgrel=0
+pkgdesc="R Interface to Stan"
+arch=(x86_64)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+license=(GPL3)
 depends=(
-  r
-  r-bh
+  pandoc
   r-ggplot2
   r-gridextra
   r-inline
   r-loo
   r-pkgbuild
+  r-quickjsr
   r-rcpp
-  r-rcppeigen
   r-rcppparallel
   r-stanheaders
-  make
-  pandoc
+)
+makedepends=(
+  r-bh
+  r-rcppeigen
+)
+checkdepends=(
+  r-testthat
 )
 optdepends=(
   r-bayesplot
-  r-bh
-  r-kernsmooth
+  r-coda
   r-knitr
-  r-matrix
-  r-parallel
-  r-rcppeigen
   r-rmarkdown
+  r-rstanarm
   r-rstantools
   r-rstudioapi
-  r-runit
   r-shinystan
-  r-v8
+  r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('b2d4edc315419037970c9fa2e8740b934966d88d40548152811f3d4a28475075')
+md5sums=('2e01ed18b705fb0fbd0b90e1577f08dc')
+sha256sums=('91fddeb9460755e02b7fbc7caa964df8d0d77417528ae96ce3e2f6d56fe60d22')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-rstan/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "GNU make, pandoc",
+    )
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-rstan/lilac.yaml

@@ -1,20 +1,24 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
-- r-bh
 - r-ggplot2
 - r-gridextra
 - r-inline
 - r-loo
 - r-pkgbuild
+- r-quickjsr
 - r-rcpp
-- r-rcppeigen
 - r-rcppparallel
 - r-stanheaders
+repo_makedepends:
+- r-bh
+- r-rcppeigen
+- r-testthat
 update_on:
-- regex: rstan_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=rstan
+- source: rpkgs
+  pkgname: rstan
+  repo: cran
+  md5: true
 - alias: r