From cbe07b83976d3ca93c1a7796234f8910d6e2302f Mon Sep 17 00:00:00 2001
From: Shun Wang <shuonwang@gmail.com>
Date: Wed, 8 Jan 2025 10:32:42 +0800
Subject: [PATCH] r-bergm: add new pkg

---
 BioArchLinux/r-bergm/PKGBUILD   | 38 +++++++++++++++++++++++++++++++++
 BioArchLinux/r-bergm/lilac.py   | 14 ++++++++++++
 BioArchLinux/r-bergm/lilac.yaml | 19 +++++++++++++++++
 3 files changed, 71 insertions(+)
 create mode 100644 BioArchLinux/r-bergm/PKGBUILD
 create mode 100644 BioArchLinux/r-bergm/lilac.py
 create mode 100644 BioArchLinux/r-bergm/lilac.yaml

diff --git a/BioArchLinux/r-bergm/PKGBUILD b/BioArchLinux/r-bergm/PKGBUILD
new file mode 100644
index 0000000000..b4fc142eb4
--- /dev/null
+++ b/BioArchLinux/r-bergm/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Shun Wang <shuonwang at gmail dot com>
+# Contributor: Shun Wang <shuonwang at gmail dot com>
+
+_pkgname=Bergm
+_pkgver=5.0.7
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Bayesian Exponential Random Graph Models"
+arch=('any')
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-2.0-or-later')
+depends=(
+  r-ergm
+  r-coda
+  r-matrixcalc
+  r-mcmcpack
+  r-mvtnorm
+  r-network
+  r-gglpk
+  r-statnet.common
+)
+optdepends=(
+  r-spelling
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('5c72aacf9a396fab6611733ce10409ca')
+b2sums=('40703eb4fd5d3dd365776f265ccdcf133d3c86832b50cffe02019cd08c1b83e50bdc0370e12864f3531caa1a6f77afc498a541f9637e252043003eab4c7e2b5f')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-bergm/lilac.py b/BioArchLinux/r-bergm/lilac.py
new file mode 100644
index 0000000000..39f2603630
--- /dev/null
+++ b/BioArchLinux/r-bergm/lilac.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    # update_aur_repo()
diff --git a/BioArchLinux/r-bergm/lilac.yaml b/BioArchLinux/r-bergm/lilac.yaml
new file mode 100644
index 0000000000..a6ee528dba
--- /dev/null
+++ b/BioArchLinux/r-bergm/lilac.yaml
@@ -0,0 +1,19 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: shun2wang
+  email: shuonwang@gmail.com
+repo_depends:
+- r-ergm
+- r-coda
+- r-matrixcalc
+- r-mcmcpack
+- r-mvtnorm
+- r-network
+- r-gglpk
+- r-statnet.common
+update_on:
+- source: rpkgs
+  pkgname: Bergm
+  repo: cran
+  md5: true
+- alias: r