Added lastz (two packages providing the same source but with different build configurations)

BioArchLinux/lastz/PKGBUILD

@@ -0,0 +1,35 @@
+# Maintainer:  Mick Elliot <m.g.elliot@rug.nl>
+# Contributor: Mick Elliot <m.g.elliot@rug.nl>
+
+pkgname=lastz
+pkgver=1.04.15
+pkgrel=1
+pkgdesc="Pairwise DNA sequence aligner"
+arch=('x86_64')
+url="https://lastz.github.io/lastz/"
+license=('MIT')
+depends=(glibc)
+makedepends=()
+provides=(lastz)
+source=("https://github.com/${pkgname}/${pkgname}/archive/refs/tags/${pkgver}.tar.gz")
+sha256sums=('46a5cfb1fd41911a36fce5d3a2721ebfec9146952943b302e78b0dfffddd77f8')
+
+build() {
+  cd "${pkgname}-${pkgver}"
+  make -f Makefile.warnings
+  make -f Makefile.warnings lastz_32
+}
+
+check() {
+  cd "${pkgname}-${pkgver}"
+  make test
+}
+
+package() {
+  cd "${pkgname}-${pkgver}"
+  export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install
+  export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install_32
+  install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+

BioArchLinux/lastz/lilac.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+

BioArchLinux/lastz/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: michaelgelliot
+    email: m.g.elliot@rug.nl
+update_on:
+  - source: github
+    github: lastz/lastz
+    use_max_tag: true
+
+

BioArchLinux/lastz_backtobackgaps/PKGBUILD

@@ -0,0 +1,36 @@
+# Maintainer:  Mick Elliot <m.g.elliot@rug.nl>
+# Contributor: Mick Elliot <m.g.elliot@rug.nl>
+
+pkgname=lastz_backtobackgaps
+_pkgname=lastz
+pkgver=1.04.15
+pkgrel=1
+pkgdesc="Pairwise DNA sequence aligner. This version allows back to back gaps (adjacent indels) but might break backward compatibility with lastZ and BLASTZ."
+arch=('x86_64')
+url="https://lastz.github.io/lastz/"
+license=('MIT')
+depends=(glibc)
+makedepends=()
+provides=(lastz)
+source=("https://github.com/${_pkgname}/${_pkgname}/archive/refs/tags/${pkgver}.tar.gz")
+sha256sums=('46a5cfb1fd41911a36fce5d3a2721ebfec9146952943b302e78b0dfffddd77f8')
+
+build() {
+  cd "${_pkgname}-${pkgver}"
+  make -f Makefile.warnings allowBackToBackGaps=ON
+  make -f Makefile.warnings lastz_32 allowBackToBackGaps=ON
+}
+
+check() {
+  cd "${_pkgname}-${pkgver}"
+  make test
+}
+
+package() {
+  cd "${_pkgname}-${pkgver}"
+  export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install
+  export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install_32
+  install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+

BioArchLinux/lastz_backtobackgaps/lilac.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+

BioArchLinux/lastz_backtobackgaps/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: michaelgelliot
+    email: m.g.elliot@rug.nl
+update_on:
+  - source: github
+    github: lastz/lastz
+    use_max_tag: true
+
+