fix: r-gstat, r-learnr

add: r-stars, r-sftime, r-lwgeom as needed by r-gstat

BioArchLinux/r-gstat/PKGBUILD

@@ -12,8 +12,11 @@ license=('GPL')
 depends=(
   r
   r-fnn
+  r-sf
+  r-sftime
   r-sp
   r-spacetime
+  r-stars
   r-zoo
 )
 optdepends=(
@@ -26,8 +29,6 @@ optdepends=(
   r-raster
   r-rgdal
   r-rgeos
-  r-sf
-  r-stars
   r-xts
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")

BioArchLinux/r-gstat/lilac.yaml

@@ -4,8 +4,11 @@ maintainers:
   email: kuoi@bioarchlinux.org
 repo_depends:
 - r-fnn
+- r-sf
+- r-sftime
 - r-sp
 - r-spacetime
+- r-stars
 - r-zoo
 update_on:
 - regex: gstat_([\d._-]+).tar.gz

BioArchLinux/r-learnr/PKGBUILD

@@ -1,10 +1,10 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=learnr
-_pkgver=0.10.1
+_pkgver=0.11.1
 pkgname=r-${_pkgname,,}
-pkgver=0.10.1
+pkgver=0.11.1
-pkgrel=5
+pkgrel=0
 pkgdesc='Interactive Tutorials for R'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@@ -12,13 +12,17 @@ license=('Apache')
 depends=(
   r
   r-checkmate
+  r-curl
+  r-digest
   r-ellipsis
   r-evaluate
   r-htmltools
   r-htmlwidgets
   r-jsonlite
   r-knitr
+  r-lifecycle
   r-markdown
+  r-promises
   r-rappdirs
   r-renv
   r-rmarkdown
@@ -32,7 +36,7 @@ optdepends=(
   r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('6174932b8dbdb7c458c8d89e242359b0903040332cd1e5741b1e956e74adbc23')
+sha256sums=('fa8fceca3023a7cf6128b4b80b4e01f1c6dc4a692df6e53c5b75f9b1e12069dc')
 
 build() {
   R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"

BioArchLinux/r-learnr/lilac.yaml

@@ -4,13 +4,17 @@ maintainers:
   email: kuoi@bioarchlinux.org
 repo_depends:
 - r-checkmate
+- r-curl
+- r-digest
 - r-ellipsis
 - r-evaluate
 - r-htmltools
 - r-htmlwidgets
 - r-jsonlite
 - r-knitr
+- r-lifecycle
 - r-markdown
+- r-promises
 - r-rappdirs
 - r-renv
 - r-rmarkdown

BioArchLinux/r-lwgeom/PKGBUILD

@@ -0,0 +1,39 @@
+# system requirements: GEOS (>= 3.5.0), PROJ (>= 4.8.0), sqlite3
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=lwgeom
+_pkgver=0.2-9
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc="Bindings to Selected 'liblwgeom' Functions for Simple Features"
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  geos
+  proj
+  r
+  r-rcpp
+  r-sf
+  r-units
+  sqlite
+)
+optdepends=(
+  r-covr
+  r-geosphere
+  r-sp
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('69b2a2efdafb0b32c801932eee7cd2c4b8402cede6487f4dfea4e14873091aa8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-lwgeom/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-lwgeom/lilac.yaml

@@ -0,0 +1,11 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-rcpp
+  - r-sf
+  - r-units
+update_on:
+  - regex: lwgeom_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=lwgeom

BioArchLinux/r-sftime/PKGBUILD

@@ -0,0 +1,41 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=sftime
+_pkgver=0.2-0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Classes and Methods for Simple Feature Objects that Have a Time Column'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('Apache')
+depends=(
+  r
+  r-sf
+)
+optdepends=(
+  r-dplyr
+  r-ggplot2
+  r-knitr
+  r-magrittr
+  r-ncmeta
+  r-rlang
+  r-rmarkdown
+  r-sp
+  r-spacetime
+  r-stars
+  r-tidyr
+  r-trajectories
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d82a1d750fb0fe7fe9962e520f00f8f969fe075a9bb53592180b4ff41430b1fa')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-sftime/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-sftime/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-sf
+update_on:
+  - regex: sftime_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=sftime

BioArchLinux/r-stars/PKGBUILD

@@ -0,0 +1,72 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+
+_pkgname=stars
+_pkgver=0.5-6
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Spatiotemporal Arrays, Raster and Vector Data Cubes'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('Apache')
+depends=(
+  r
+  r-abind
+  r-classint
+  r-lwgeom
+  r-rlang
+  r-sf
+  r-units
+)
+optdepends=(
+  r-clue
+  r-covr
+  r-cubelyr
+  r-digest
+  r-dplyr
+  r-exactextractr
+  r-fnn
+  r-future.apply
+  r-ggforce
+  r-ggplot2
+  r-ggthemes
+  r-gstat
+  r-httr
+  r-jsonlite
+  r-knitr
+  r-mapdata
+  r-maps
+  r-ncdfgeom
+  r-ncmeta
+  r-pbapply
+  r-pcict
+  r-plm
+  r-randomforest
+  r-raster
+  r-rgdal
+  r-rmarkdown
+  r-rnetcdf
+  r-sp
+  r-spacetime
+  r-spatstat
+  r-spatstat.geom
+  r-starsdata
+  r-terra
+  r-testthat
+  r-tidyr
+  r-viridis
+  r-xts
+  r-zoo
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e0413c95423635f7f7b2520813382e911257da8ace9b743da9fe3eab568a9461')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-stars/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-stars/lilac.yaml

@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-abind
+  - r-classint
+  - r-lwgeom
+  - r-rlang
+  - r-sf
+  - r-units
+update_on:
+  - regex: stars_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=stars