From ccf7e3e7e566c8d6db5aa379db07b4b22e5a1967 Mon Sep 17 00:00:00 2001
From: Shun Wang <shuonwang@gmail.com>
Date: Tue, 24 Dec 2024 07:04:07 +0000
Subject: [PATCH] r-mirt: add new pkg

---
 BioArchLinux/r-mirt/PKGBUILD   | 51 ++++++++++++++++++++++++++++++++++
 BioArchLinux/r-mirt/lilac.py   | 14 ++++++++++
 BioArchLinux/r-mirt/lilac.yaml | 22 +++++++++++++++
 3 files changed, 87 insertions(+)
 create mode 100644 BioArchLinux/r-mirt/PKGBUILD
 create mode 100644 BioArchLinux/r-mirt/lilac.py
 create mode 100644 BioArchLinux/r-mirt/lilac.yaml

diff --git a/BioArchLinux/r-mirt/PKGBUILD b/BioArchLinux/r-mirt/PKGBUILD
new file mode 100644
index 0000000000..9b7fa95359
--- /dev/null
+++ b/BioArchLinux/r-mirt/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Shun Wang <shuonwang at gmail dot com>
+
+_pkgname=mirt
+_pkgver=1.43
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Multidimensional Item Response Theory"
+arch=('any')
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-3.0-or-later')
+depends=(
+  r-gparotation
+  r-gridextra
+  r-matrix
+  r-rcpp
+  r-mgcv
+  r-vegan
+  r-deriv
+  r-splines
+  r-pbapply
+  r-dcurver
+  r-simdesign
+)
+optdepends=(
+  r-boot
+  r-latticeextra
+  r-directlabels
+  r-shiny
+  r-knitr
+  r-markdown
+  r-rsolnp
+  r-nloptr
+  r-sirt
+  r-plink
+  r-mirtcat
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('a8bc44dbc3effaa5e87c8c0155bf6f96')
+b2sums=('e5aade6a4c1c3a3fcefa2e715ffb8b6dd8aa1178069e341a85428f88ed2ba44397d5441ff13c787c31347676b4d74d5d0824a61e09cec01bdf0a8a8606f78525')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-mirt/lilac.py b/BioArchLinux/r-mirt/lilac.py
new file mode 100644
index 0000000000..b5cdb057c5
--- /dev/null
+++ b/BioArchLinux/r-mirt/lilac.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-mirt/lilac.yaml b/BioArchLinux/r-mirt/lilac.yaml
new file mode 100644
index 0000000000..6fb70240aa
--- /dev/null
+++ b/BioArchLinux/r-mirt/lilac.yaml
@@ -0,0 +1,22 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: shun2wang
+  email: shuonwang@gmail.com
+repo_depends:
+- r-gparotation
+- r-gridextra
+- r-matrix
+- r-rcpp
+- r-mgcv
+- r-vegan
+- r-deriv
+- r-splines
+- r-pbapply
+- r-dcurver
+- r-simdesign
+update_on:
+- source: rpkgs
+  pkgname: mirt
+  repo: cran
+  md5: true
+- alias: r