r-getoptlong: use metadata checks

BioArchLinux/r-getoptlong/PKGBUILD

@@ -1,21 +1,25 @@
-# system requirements: Perl, Getopt::Long
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=GetoptLong
 _pkgver=1.0.5
 pkgname=r-${_pkgname,,}
-pkgver=1.0.5
+pkgver=${_pkgver//-/.}
 pkgrel=6
-pkgdesc='Parsing Command-Line Arguments and Simple Variable Interpolation'
+pkgdesc="Parsing Command-Line Arguments and Simple Variable Interpolation"
-arch=('any')
+arch=(any)
-url="https://cran.r-project.org/package=${_pkgname}"
+url="https://cran.r-project.org/package=$_pkgname"
 license=('MIT')
 depends=(
-  r
+  perl-json
+  perl-json-xs
+  perl-yaml-syck
   r-crayon
   r-globaloptions
   r-rjson
-  perl
+)
+checkdepends=(
+  r-testthat
 )
 optdepends=(
   r-knitr
@@ -23,16 +27,36 @@ optdepends=(
   r-rmarkdown
   r-testthat
 )
-source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
-sha256sums=('8c237986ed3dfb72d956ad865ef7768644eebf144675ad66140acfd1aca9d701')
+        "fix-tests.patch")
+md5sums=('859f5b437ccf1eda9fe0e99eb80b2def'
+         '2973d9109d39fe8fb5f1d3b93b7cb481')
+b2sums=('e33d5c05f4a597144881cefdfcc1c96698136de1559797ac58a0e4f16cf92498e41407d3675fdebafef205379d17fba76f3354c25bbe509444c0afd0dc4e6b59'
+        'fa9093742756bbc717c4702230155ff18358d209aa04bdce99940f717e19acdfe64bbfd5a46c7f9bda6ca767a376d5b9388c8c6029352ed27e2c539a4387e22d')
+
+prepare() {
+  # fix tests
+  patch -Np1 -i fix-tests.patch
+
+  # use system perl modules
+  cd "$_pkgname/inst/extdata"
+  rm -r perl_lib
+}
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true GETOPTLONG_TESTING=true Rscript --vanilla test-all.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
-  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-getoptlong/fix-tests.patch

@@ -0,0 +1,13 @@
+diff --git a/GetoptLong/R/get_options.R b/GetoptLong/R/get_options.R
+index a01c65e..97a80ef 100644
+--- a/GetoptLong/R/get_options.R
++++ b/GetoptLong/R/get_options.R
+@@ -45,7 +45,7 @@ GetoptLong = function(..., help_head = NULL, help_foot = NULL, envir = parent.fr
+ 	argv_str = NULL, template_control = list(), 
+ 	help_style = GetoptLong.options$help_style) {
+ 
+-	if(is.null(get_scriptname())) {
++	if(is.null(get_scriptname()) || identical(Sys.getenv("GETOPTLONG_TESTING"), "true")) {
+ 		IS_UNDER_COMMAND_LINE = FALSE
+ 	} else {
+ 		IS_UNDER_COMMAND_LINE = TRUE

BioArchLinux/r-getoptlong/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(
-        if line.startswith('_pkgver='):
+        _G,
-            line = f'_pkgver={_G.newver}'
+        expect_systemrequirements = "Perl, Getopt::Long",
-        print(line)
+    )
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-getoptlong/lilac.yaml

@@ -1,13 +1,16 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
+- github: pekkarr
-  email: kuoi@bioarchlinux.org
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-crayon
 - r-globaloptions
 - r-rjson
+repo_makedepends:
+- r-testthat
 update_on:
-- regex: GetoptLong_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: GetoptLong
-  url: https://cran.r-project.org/package=GetoptLong
+  repo: cran
+  md5: true
 - alias: r