vcflib:add wfa2-lib to depends.

bwa: provide shared lib

BioArchLinux/bwa/PKGBUILD

@@ -1,8 +1,8 @@
 # Maintainer: PumpkinCheshire <sollyonzou at gmail dot com>
 
 pkgname=bwa
-pkgver=0.7.17.r27.g3ddd7b8
-pkgrel=3
+pkgver=0.7.17.r54.g139f68f
+pkgrel=1
 pkgdesc="Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome. https://doi.org/10.1093/bioinformatics/btp324"
 arch=('x86_64')
 url="http://bio-bwa.sourceforge.net/"
@@ -18,7 +18,12 @@ pkgver() {
 
 build() {
     cd "$srcdir/${pkgname}"
+    sed -i "/CFLAGS=/ s|$| -fPIC|" Makefile
     make
+    install -Dm644 libbwa.a lib/libbwa.a
+    cd lib
+    ar -x libbwa.a
+    gcc -shared *.o -o libbwa.so
 }
 
 package() {
@@ -26,4 +31,5 @@ package() {
     install -Dm644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ${pkgname}/COPYING
     cd $srcdir/${pkgname}
     install -Dm644 *.h -t "${pkgdir}/usr/include/bwa"
+    install -Dm755 lib/libbwa.so -t "${pkgdir}/usr/lib"
 }

BioArchLinux/vcflib/PKGBUILD

@@ -1,13 +1,13 @@
 # Maintainer: Guoyi
 pkgname=vcflib
 pkgver=1.0.9
-pkgrel=1
+pkgrel=2
 pkgdesc="C++ library and cmdline tools for parsing and manipulating VCF files doi: 10.1101/2021.05.21.445151"
 arch=('x86_64')
 url="https://github.com/vcflib/vcflib"
 license=('MIT')
-depends=('python' 'htslib')
-makedepends=('git' 'cmake' 'pybind11' 'tabixpp' 'pandoc' 'wfa2-lib')
+depends=('python' 'htslib' 'wfa2-lib')
+makedepends=('git' 'cmake' 'pybind11' 'tabixpp' 'pandoc')
 optdepends=('r: running R scripts'
 'perl: running Perl scripts'
 )