From d1135bd75c391a29e1ad58f942e31a59a6a843a2 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Wed, 11 Oct 2023 14:54:07 +0300
Subject: [PATCH] r-pkgbuild: use metadata checks

---
 BioArchLinux/r-pkgbuild/PKGBUILD   | 35 ++++++++++++++++++++----------
 BioArchLinux/r-pkgbuild/lilac.py   | 11 +++++-----
 BioArchLinux/r-pkgbuild/lilac.yaml | 12 +++++-----
 3 files changed, 35 insertions(+), 23 deletions(-)

diff --git a/BioArchLinux/r-pkgbuild/PKGBUILD b/BioArchLinux/r-pkgbuild/PKGBUILD
index 7e8af32b85..d5d3fc9a91 100644
--- a/BioArchLinux/r-pkgbuild/PKGBUILD
+++ b/BioArchLinux/r-pkgbuild/PKGBUILD
@@ -1,16 +1,19 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: peippo <christoph+aur@christophfink.com>
+# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
+# Contributor: Alex Branham <branham@utexas.edu>
 
 _pkgname=pkgbuild
 _pkgver=1.4.2
 pkgname=r-${_pkgname,,}
-pkgver=1.4.2
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Find Tools Needed to Build R Packages'
-arch=('any')
+pkgdesc="Find Tools Needed to Build R Packages"
+arch=(any)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('MIT')
+license=(MIT)
 depends=(
-  r
   r-callr
   r-cli
   r-crayon
@@ -19,7 +22,6 @@ depends=(
   r-processx
   r-r6
   r-rprojroot
-  r-withr
 )
 optdepends=(
   r-covr
@@ -29,17 +31,26 @@ optdepends=(
   r-rcpp
   r-rmarkdown
   r-testthat
+  r-withr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('b4a62e531fc8970dc28721d6d87cb036')
 sha256sums=('2334a245d75420b2adf9f217a6bc4a5f7faaa4244a6aac2b774b26f199fc82c5')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" Rscript --vanilla build-tools.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
-  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et:
diff --git a/BioArchLinux/r-pkgbuild/lilac.py b/BioArchLinux/r-pkgbuild/lilac.py
index 620556bc87..9244fd6914 100644
--- a/BioArchLinux/r-pkgbuild/lilac.py
+++ b/BioArchLinux/r-pkgbuild/lilac.py
@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()
diff --git a/BioArchLinux/r-pkgbuild/lilac.yaml b/BioArchLinux/r-pkgbuild/lilac.yaml
index 4964333b49..ae7b952896 100644
--- a/BioArchLinux/r-pkgbuild/lilac.yaml
+++ b/BioArchLinux/r-pkgbuild/lilac.yaml
@@ -1,7 +1,7 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-callr
 - r-cli
@@ -11,9 +11,9 @@ repo_depends:
 - r-processx
 - r-r6
 - r-rprojroot
-- r-withr
 update_on:
-- regex: pkgbuild_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=pkgbuild
+- source: rpkgs
+  pkgname: pkgbuild
+  repo: cran
+  md5: true
 - alias: r