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freebayes: fix build failure

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This commit is contained in:
sukanka 2025-02-09 16:26:26 +08:00
parent 6dfcb506cc
commit d1cb0ade42
1 changed files with 9 additions and 4 deletions
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13
BioArchLinux/freebayes/PKGBUILD
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@ -2,7 +2,7 @@
# Contributor: Clint Valentine <valentine.clint@gmail.com>
pkgname=freebayes
pkgver=1.3.8
pkgrel=5
pkgrel=6
pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping"
arch=('x86_64')
url="https://github.com/freebayes/freebayes"
@ -28,9 +28,14 @@ prepare() {
cd "${pkgname}-${pkgver}"
sed -i "s|dependency('libvcflib'|cc.find_library('libvcflib'|g" meson.build
sed -i "s|dependency('libseqlib'|cc.find_library('libseqlib'|g" meson.build
sed -i 's|#include "../intervaltree/IntervalTree.h"|#include <IntervalTree.h>|g' src/{*.cpp,*.h}
sed -i meson.build -e "s|dependency('libvcflib'|cc.find_library('libvcflib'|g" \
-e "s|dependency('libseqlib'|cc.find_library('libseqlib'|g" \
-e "s|'src',|'src', '/usr/include',|g"
sed -i src/{*.cpp,*.h} \
-e 's|#include "../intervaltree/IntervalTree.h"|#include <vcflib/IntervalTree.h>|g' \
-e 's|<IntervalTree.h>|<vcflib/IntervalTree.h>|g' \
-e 's|"join.h"|<vcflib/join.h>|g' \
-e 's|"Variant.h"|<vcflib/Variant.h>|g'
}
build() {
cd "${pkgname}-${pkgver}"