From d22695e7b607693da6a1d1734ac0a1094d4ad01d Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Tue, 17 Oct 2023 07:35:07 +0300
Subject: [PATCH] r-oaqc: init, dependency of r-cbnplot

---
 BioArchLinux/r-oaqc/PKGBUILD   | 32 ++++++++++++++++++++++++++++++++
 BioArchLinux/r-oaqc/lilac.py   | 17 +++++++++++++++++
 BioArchLinux/r-oaqc/lilac.yaml | 10 ++++++++++
 3 files changed, 59 insertions(+)
 create mode 100644 BioArchLinux/r-oaqc/PKGBUILD
 create mode 100644 BioArchLinux/r-oaqc/lilac.py
 create mode 100644 BioArchLinux/r-oaqc/lilac.yaml

diff --git a/BioArchLinux/r-oaqc/PKGBUILD b/BioArchLinux/r-oaqc/PKGBUILD
new file mode 100644
index 0000000000..903f03ffad
--- /dev/null
+++ b/BioArchLinux/r-oaqc/PKGBUILD
@@ -0,0 +1,32 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=oaqc
+_pkgver=1.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Computation of the Orbit-Aware Quad Census"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL3)
+depends=(
+  r
+)
+optdepends=(
+  r-igraph
+  r-knitr
+  r-rmarkdown
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('035a9d6aebcc688ab3cb16d3d47a28cd')
+sha256sums=('4e56c8bbe6803223fcef79d35efe08aa18b95efc4d495d6e16b93edfd3a180e5')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-oaqc/lilac.py b/BioArchLinux/r-oaqc/lilac.py
new file mode 100644
index 0000000000..b8fd4ff762
--- /dev/null
+++ b/BioArchLinux/r-oaqc/lilac.py
@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "C++11",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-oaqc/lilac.yaml b/BioArchLinux/r-oaqc/lilac.yaml
new file mode 100644
index 0000000000..0300f4aeb2
--- /dev/null
+++ b/BioArchLinux/r-oaqc/lilac.yaml
@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+update_on:
+- source: rpkgs
+  pkgname: oaqc
+  repo: cran
+  md5: true
+- alias: r