From d26e808fb65e7012148fb874c51c7c802f307a5f Mon Sep 17 00:00:00 2001
From: starsareintherose <starsareintherose@outlook.com>
Date: Sun, 29 Aug 2021 17:18:26 +0800
Subject: [PATCH] add phyml

---
 phyml/PKGBUILD   | 27 +++++++++++++++++++++++++++
 phyml/lilac.py   | 11 +++++++++++
 phyml/lilac.yaml |  8 ++++++++
 3 files changed, 46 insertions(+)
 create mode 100644 phyml/PKGBUILD
 create mode 100644 phyml/lilac.py
 create mode 100644 phyml/lilac.yaml

diff --git a/phyml/PKGBUILD b/phyml/PKGBUILD
new file mode 100644
index 0000000000..404388b5ac
--- /dev/null
+++ b/phyml/PKGBUILD
@@ -0,0 +1,27 @@
+# Maintainer: Michael Schubert <mschu.dev at gmail>
+# Contributor: Mick Elliot <micke at sfu dot ca>
+pkgname=phyml
+pkgver=3.3.20200621
+pkgrel=1
+epoch=1
+pkgdesc="Builds phylogenies from DNA or protein sequences using a maximum likelihood approach"
+arch=('i686' 'x86_64')
+url="https://github.com/stephaneguindon/phyml"
+license=('GPL2')
+source=($pkgname-$pkgver.tar.gz::$url/archive/v$pkgver.tar.gz)
+sha256sums=('a8243923ee08c74cab609a4b086ade66c6156fc2b24450e2a500108dc644c867')
+
+build() {
+  cd "$srcdir/phyml-$pkgver"
+#  aclocal
+#  autoreconf --force --install
+#  automake --force --add-missing
+  ./autogen.sh
+  ./configure --prefix=/usr --enable-phyml
+  make
+}
+
+package() {
+  cd "$srcdir/phyml-$pkgver"
+  make DESTDIR="$pkgdir" install
+}
diff --git a/phyml/lilac.py b/phyml/lilac.py
new file mode 100644
index 0000000000..8a6e65aeba
--- /dev/null
+++ b/phyml/lilac.py
@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
diff --git a/phyml/lilac.yaml b/phyml/lilac.yaml
new file mode 100644
index 0000000000..861d6520ed
--- /dev/null
+++ b/phyml/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: stephaneguindon/phyml
+    use_latest_release: true