From d4a9fa81ea1e9fd36986b50d99900f437e3f5fd5 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Fri, 13 Oct 2023 14:28:38 +0300
Subject: [PATCH] r-reticulate: fix optdepends, compile python bytecode

---
 BioArchLinux/r-reticulate/PKGBUILD   | 5 +++++
 BioArchLinux/r-reticulate/lilac.yaml | 2 ++
 2 files changed, 7 insertions(+)

diff --git a/BioArchLinux/r-reticulate/PKGBUILD b/BioArchLinux/r-reticulate/PKGBUILD
index c367afed75..be30f33a98 100644
--- a/BioArchLinux/r-reticulate/PKGBUILD
+++ b/BioArchLinux/r-reticulate/PKGBUILD
@@ -38,6 +38,8 @@ checkdepends=(
   r-testthat
 )
 optdepends=(
+  "ipython: IPython console app"
+  "python-numpy: translation between R matrices and NumPy arrays"
   r-callr
   r-cli
   r-glue
@@ -53,6 +55,9 @@ sha256sums=('8d0d8922cd811153836e95354357615968b005a4d0d4c5734441953c526e4206')
 build() {
   mkdir -p build
   R CMD INSTALL "$_pkgname" -l build
+
+  # compile python bytecode
+  python -m compileall -o 0 -o 1 -s build -p /usr/lib/R/library "build/$_pkgname/python/rpytools"
 }
 
 check() {
diff --git a/BioArchLinux/r-reticulate/lilac.yaml b/BioArchLinux/r-reticulate/lilac.yaml
index 97d962e9bc..2d0aa23d31 100644
--- a/BioArchLinux/r-reticulate/lilac.yaml
+++ b/BioArchLinux/r-reticulate/lilac.yaml
@@ -22,3 +22,5 @@ update_on:
   md5: true
 - alias: r
 - alias: python
+- source: manual
+  manual: 1