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update: url, source and lilac.yaml

Browse source 
for archived pkgs in bioconductor.
This commit is contained in:
sukanka 2022-11-04 12:31:44 +08:00
parent daaa1f99bc
commit d7adb26b4f
92 changed files with 172 additions and 172 deletions
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4
BioArchLinux/r-abaenrichment/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=ABAEnrichment
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=2
pkgrel=3
pkgdesc='Gene expression enrichment in human brain regions'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-abaenrichment/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/ABAEnrichment
url: https://bioconductor.org/packages/3.15/ABAEnrichment
- alias: r

4
BioArchLinux/r-autotuner/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=Autotuner
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=3
pkgrel=4
pkgdesc='Automated parameter selection for untargeted metabolomics data processing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r

2
BioArchLinux/r-autotuner/lilac.yaml
View file

@ -13,5 +13,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/Autotuner
url: https://bioconductor.org/packages/3.15/Autotuner
- alias: r

6
BioArchLinux/r-cand/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=CAnD
_pkgver=1.27.0
pkgname=r-${_pkgname,,}
pkgver=1.27.0
pkgrel=2
pkgrel=3
pkgdesc='Perform Chromosomal Ancestry Differences (CAnD) Analyses'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
@ -19,7 +19,7 @@ optdepends=(
r-biocstyle
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6bd69498e5248e8c8aa952c838016cad48e22c4fdeea5f628ca1b6b363a9a093')
build() {

2
BioArchLinux/r-cand/lilac.yaml
View file

@ -8,5 +8,5 @@ repo_depends:
update_on:
- regex: CAnD_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/CAnD
url: https://bioconductor.org/packages/3.15/CAnD
- alias: r

6
BioArchLinux/r-caomicsv/PKGBUILD
View file

@ -4,17 +4,17 @@ _pkgname=caOmicsV
_pkgver=1.25.0
pkgname=r-${_pkgname,,}
pkgver=1.25.0
pkgrel=2
pkgrel=3
pkgdesc='Visualization of multi-dimentional cancer genomics data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-bc3net
r-igraph
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5f8fc5982eda405b31aaa8b0f9bb3ed77df42cd62e08ed1d6f5a5718658d2482')
build() {

2
BioArchLinux/r-caomicsv/lilac.yaml
View file

@ -8,5 +8,5 @@ repo_depends:
update_on:
- regex: caOmicsV_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/caOmicsV
url: https://bioconductor.org/packages/3.15/caOmicsV
- alias: r

6
BioArchLinux/r-clonotyper/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=clonotypeR
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=2
pkgrel=3
pkgdesc='High throughput analysis of T cell antigen receptor sequences'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('custom')
depends=(
r
@ -21,7 +21,7 @@ optdepends=(
r-runit
r-vegan
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d83cf13658ec2119cfddf4b4d88cdd74843a823bba57dd83a596ad219891d696')
build() {

2
BioArchLinux/r-clonotyper/lilac.yaml
View file

@ -5,5 +5,5 @@ maintainers:
update_on:
- regex: clonotypeR_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/clonotypeR
url: https://bioconductor.org/packages/3.15/clonotypeR
- alias: r

4
BioArchLinux/r-countclust/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=CountClust
_pkgver=1.23.1
pkgname=r-${_pkgname,,}
pkgver=1.23.1
pkgrel=2
pkgrel=3
pkgdesc='Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-countclust/lilac.yaml
View file

@ -17,5 +17,5 @@ repo_depends:
update_on:
- regex: CountClust_([\d._-]+).zip
source: regex
url: https://bioconductor.org/packages/CountClust
url: https://bioconductor.org/packages/3.15/CountClust
- alias: r

6
BioArchLinux/r-ctggem/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=ctgGEM
_pkgver=1.7.0
pkgname=r-${_pkgname,,}
pkgver=1.7.0
pkgrel=2
pkgrel=3
pkgdesc='Generating Tree Hierarchy Visualizations from Gene Expression Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -28,7 +28,7 @@ optdepends=(
r-rmarkdown
r-vgam
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('abb1cc74e7598e646df2a920557ddc0145d0ae068e07cdd7c844806cd2bfaa42')
build() {

2
BioArchLinux/r-ctggem/lilac.yaml
View file

@ -13,5 +13,5 @@ repo_depends:
update_on:
- regex: ctgGEM_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/ctgGEM
url: https://bioconductor.org/packages/3.15/ctgGEM
- alias: r

6
BioArchLinux/r-cytotree/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=CytoTree
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=2
pkgrel=3
pkgdesc='A Toolkit for Flow And Mass Cytometry Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -42,7 +42,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a8cd66a10de1468d24e620c25d523e643a8508f8db68070ab7cf8e3625874db7')
build() {

2
BioArchLinux/r-cytotree/lilac.yaml
View file

@ -28,5 +28,5 @@ repo_depends:
update_on:
- regex: CytoTree_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/CytoTree
url: https://bioconductor.org/packages/3.15/CytoTree
- alias: r

6
BioArchLinux/r-diffloop/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=diffloop
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=2
pkgrel=3
pkgdesc='Identifying differential DNA loops from chromatin topology data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -41,7 +41,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2f48de52b10b9b59bf31ca50f189939c3c155e14a852d1cb39fc77047c7a126c')
build() {

2
BioArchLinux/r-diffloop/lilac.yaml
View file

@ -27,5 +27,5 @@ repo_depends:
update_on:
- regex: diffloop_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/diffloop
url: https://bioconductor.org/packages/3.15/diffloop
- alias: r

6
BioArchLinux/r-enmcb/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=EnMCB
_pkgver=1.8.2
pkgname=r-${_pkgname,,}
pkgver=1.8.2
pkgrel=2
pkgrel=3
pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -34,7 +34,7 @@ optdepends=(
r-survminer
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('847b4ad1e11d292f898f5221fc4f54bba9f8d5cf1530be8f54b4969f893ecace')
build() {

2
BioArchLinux/r-enmcb/lilac.yaml
View file

@ -17,5 +17,5 @@ repo_depends:
update_on:
- regex: EnMCB_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/EnMCB
url: https://bioconductor.org/packages/3.15/EnMCB
- alias: r

6
BioArchLinux/r-ensemblvep/PKGBUILD
View file

@ -5,10 +5,10 @@ _pkgname=ensemblVEP
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=2
pkgrel=3
pkgdesc='R Interface to Ensembl Variant Effect Predictor'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
@ -23,7 +23,7 @@ depends=(
optdepends=(
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c8ac6f434fe43cfc9bb1d7fe39bd233a4c93b2809dc72bcc736083df9bae94f6')
build() {

2
BioArchLinux/r-ensemblvep/lilac.yaml
View file

@ -13,5 +13,5 @@ repo_depends:
update_on:
- regex: ensemblVEP_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/ensemblVEP
url: https://bioconductor.org/packages/3.15/ensemblVEP
- alias: r

6
BioArchLinux/r-flowutils/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=flowUtils
_pkgver=1.59.0
pkgname=r-${_pkgname,,}
pkgver=1.59.0
pkgrel=2
pkgrel=3
pkgdesc='Utilities for flow cytometry'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
@ -21,7 +21,7 @@ depends=(
optdepends=(
r-gatingmldata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('46d4295df433797feb9b7ce8f285a87b5a08d19a383c8397a6b2a6859b30a387')
build() {

2
BioArchLinux/r-flowutils/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: flowUtils_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/flowUtils
url: https://bioconductor.org/packages/3.15/flowUtils
- alias: r

6
BioArchLinux/r-gaia/PKGBUILD
View file

@ -4,15 +4,15 @@ _pkgname=gaia
_pkgver=2.39.0
pkgname=r-${_pkgname,,}
pkgver=2.39.0
pkgrel=2
pkgrel=3
pkgdesc='GAIA: An R package for genomic analysis of significant chromosomal aberrations.'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ea92176588f246094ef4ee7f5957ba3390438d0f8dc6a00e3cd136e39be07508')
build() {

2
BioArchLinux/r-gaia/lilac.yaml
View file

@ -5,5 +5,5 @@ maintainers:
update_on:
- regex: gaia_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/gaia
url: https://bioconductor.org/packages/3.15/gaia
- alias: r

6
BioArchLinux/r-gapgom/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=GAPGOM
_pkgver=1.11.0
pkgname=r-${_pkgname,,}
pkgver=1.11.0
pkgrel=2
pkgrel=3
pkgdesc='GAPGOM (novel Gene Annotation Prediction and other GO Metrics)'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -57,7 +57,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('df7826b3bc9a7e5063d6b70e4de3ba5d5ddddff6d82bce56cbed93fe0b3f896a')
build() {

2
BioArchLinux/r-gapgom/lilac.yaml
View file

@ -23,5 +23,5 @@ repo_depends:
update_on:
- regex: GAPGOM_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/GAPGOM
url: https://bioconductor.org/packages/3.15/GAPGOM
- alias: r

6
BioArchLinux/r-gcsconnection/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=GCSConnection
_pkgver=1.7.0
pkgname=r-${_pkgname,,}
pkgver=1.7.0
pkgrel=2
pkgrel=3
pkgdesc='Creating R Connection with Google Cloud Storage'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -23,7 +23,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ceee2f03534b4e498db7bb4cb4bc9b662540d9d3135ffcd7fe1ef222d0e055df')
build() {

2
BioArchLinux/r-gcsconnection/lilac.yaml
View file

@ -11,5 +11,5 @@ repo_depends:
update_on:
- regex: GCSConnection_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/GCSConnection
url: https://bioconductor.org/packages/3.15/GCSConnection
- alias: r

6
BioArchLinux/r-gcsfilesystem/PKGBUILD
View file

@ -5,10 +5,10 @@ _pkgname=GCSFilesystem
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=4
pkgrel=5
pkgdesc='Mounting a Google Cloud bucket to a local directory'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -20,7 +20,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cd404d908ba897613ac5d6fcd4988909e6989064f7071c32f1e138039eef6862')
build() {

2
BioArchLinux/r-gcsfilesystem/lilac.yaml
View file

@ -5,5 +5,5 @@ maintainers:
update_on:
- regex: GCSFilesystem_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/GCSFilesystem
url: https://bioconductor.org/packages/3.15/GCSFilesystem
- alias: r

4
BioArchLinux/r-genogam/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=GenoGAM
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=2.14.0
pkgrel=2
pkgrel=3
pkgdesc='A GAM based framework for analysis of ChIP-Seq data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-genogam/lilac.yaml
View file

@ -24,5 +24,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/GenoGAM
url: https://bioconductor.org/packages/3.15/GenoGAM
- alias: r

6
BioArchLinux/r-genphen/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=genphen
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=2
pkgrel=3
pkgdesc='genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -30,7 +30,7 @@ optdepends=(
r-testthat
r-xtable
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6805ee931998ad03305a3b56a3356502cb0519cf1bba2f3fe931eece9ec2c0d4')
build() {

2
BioArchLinux/r-genphen/lilac.yaml
View file

@ -14,5 +14,5 @@ repo_depends:
update_on:
- regex: genphen_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/genphen
url: https://bioconductor.org/packages/3.15/genphen
- alias: r

6
BioArchLinux/r-gpart/PKGBUILD
View file

@ -5,10 +5,10 @@ _pkgname=gpart
_pkgver=1.13.0
pkgname=r-${_pkgname,,}
pkgver=1.13.0
pkgrel=2
pkgrel=3
pkgdesc='Human genome partitioning of dense sequencing data by identifying haplotype blocks'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -32,7 +32,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix_pi.patch")
sha256sums=('4d8b149f072e10ad1ad149bf09325871cb08d740511bcaef9b4c08aea6e42894'
'033774f380e8c8edbe056b8dd2b076bcd408895a4ecaa75eb6da5e1c99caae70')

2
BioArchLinux/r-gpart/lilac.yaml
View file

@ -16,5 +16,5 @@ repo_depends:
update_on:
- regex: gpart_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/gpart
url: https://bioconductor.org/packages/3.15/gpart
- alias: r

6
BioArchLinux/r-gprege/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=gprege
_pkgver=1.39.0
pkgname=r-${_pkgname,,}
pkgver=1.39.0
pkgrel=2
pkgrel=3
pkgdesc='Gaussian Process Ranking and Estimation of Gene Expression time-series'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('AGPL')
depends=(
r
@ -16,7 +16,7 @@ depends=(
optdepends=(
r-spam
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e8a88b04301dc258f87f718b1a74ab707ed7f1566ca8111b3488c9a3cef2d28b')
build() {

2
BioArchLinux/r-gprege/lilac.yaml
View file

@ -7,5 +7,5 @@ repo_depends:
update_on:
- regex: gprege_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/gprege
url: https://bioconductor.org/packages/3.15/gprege
- alias: r

6
BioArchLinux/r-inversion/PKGBUILD
View file

@ -4,16 +4,16 @@ _pkgname=inveRsion
_pkgver=1.43.0
pkgname=r-${_pkgname,,}
pkgver=1.43.0
pkgrel=2
pkgrel=3
pkgdesc='Inversions in genotype data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-haplo.stats
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('636acd54444a9fc418469e3e2b3f0f222144f0be8403748e874274e23a085840')
build() {

2
BioArchLinux/r-inversion/lilac.yaml
View file

@ -7,5 +7,5 @@ repo_depends:
update_on:
- regex: inveRsion_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/inveRsion
url: https://bioconductor.org/packages/3.15/inveRsion
- alias: r

6
BioArchLinux/r-isogenegui/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=IsoGeneGUI
_pkgver=2.31.0
pkgname=r-${_pkgname,,}
pkgver=2.31.0
pkgrel=2
pkgrel=3
pkgdesc='A graphical user interface to conduct a dose-response analysis of microarray data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -31,7 +31,7 @@ depends=(
optdepends=(
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f6f5719df91c062ef1ac9241caf4838d79f717de4175f49064e86756b7eefff0')
build() {

2
BioArchLinux/r-isogenegui/lilac.yaml
View file

@ -22,5 +22,5 @@ repo_depends:
update_on:
- regex: IsoGeneGUI_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/IsoGeneGUI
url: https://bioconductor.org/packages/3.15/IsoGeneGUI
- alias: r

6
BioArchLinux/r-iteremoval/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=iteremoval
_pkgver=1.15.1
pkgname=r-${_pkgname,,}
pkgver=1.15.1
pkgrel=2
pkgrel=3
pkgdesc='Iteration removal method for feature selection'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -20,7 +20,7 @@ optdepends=(
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0218f4fd2bcf4e71df405a78db01a028fa49a8093d6da63cffaab8dd3f45942f')
build() {

2
BioArchLinux/r-iteremoval/lilac.yaml
View file

@ -10,5 +10,5 @@ repo_depends:
update_on:
- regex: iteremoval_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/iteremoval
url: https://bioconductor.org/packages/3.15/iteremoval
- alias: r

6
BioArchLinux/r-macpet/PKGBUILD
View file

@ -6,10 +6,10 @@ _pkgname=MACPET
_pkgver=1.15.1
pkgname=r-${_pkgname,,}
pkgver=1.15.1
pkgrel=2
pkgrel=3
pkgdesc='Model based analysis for paired-end data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -45,7 +45,7 @@ optdepends=(
r-reshape2
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix_dbleps.patch")
sha256sums=('54ff827da7f169b43368d31b6417697ff36a20e464f5fb201de988d7dd88821c'
'2b22a1d373b9685991d80ea9177e3f085f50c229b995f4ee1be97510fd65632f')

2
BioArchLinux/r-macpet/lilac.yaml
View file

@ -27,5 +27,5 @@ repo_depends:
update_on:
- regex: MACPET_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/MACPET
url: https://bioconductor.org/packages/3.15/MACPET
- alias: r

6
BioArchLinux/r-mmappr2/PKGBUILD
View file

@ -5,10 +5,10 @@ _pkgname=MMAPPR2
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=2
pkgrel=3
pkgdesc='Mutation Mapping Analysis Pipeline for Pooled RNA-Seq'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -39,7 +39,7 @@ optdepends=(
r-roxygen2
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d9cd249022e557ea7204dd410da4d208201b2aebaf6d1b7f753edd7854960af1')
build() {

2
BioArchLinux/r-mmappr2/lilac.yaml
View file

@ -23,5 +23,5 @@ repo_depends:
update_on:
- regex: MMAPPR2_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/MMAPPR2
url: https://bioconductor.org/packages/3.15/MMAPPR2
- alias: r

6
BioArchLinux/r-networkbma/PKGBUILD
View file

@ -6,10 +6,10 @@ _pkgname=networkBMA
_pkgver=2.35.0
pkgname=r-${_pkgname,,}
pkgver=2.35.0
pkgrel=2
pkgrel=3
pkgdesc='Regression-based network inference using Bayesian Model Averaging'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -24,7 +24,7 @@ depends=(
makedepends=(
patch
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix_boostinc.patch")
sha256sums=('a29156b5bcc82d61f512436a96d29d6518a7042a684c3cd335795d754e5a4075'
'fe3b4f88661542b0053dc01af9755514e1f889166a68dd1735df29d7e459cfbf')

2
BioArchLinux/r-networkbma/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: networkBMA_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/networkBMA
url: https://bioconductor.org/packages/3.15/networkBMA
- alias: r

4
BioArchLinux/r-onassis/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=Onassis
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=2
pkgrel=3
pkgdesc='OnASSIs Ontology Annotation and Semantic SImilarity software'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-onassis/lilac.yaml
View file

@ -20,6 +20,6 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/Onassis
url: https://bioconductor.org/packages/3.15/Onassis
- alias: r
pre_build: vcs_update

4
BioArchLinux/r-perturbatr/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=perturbatr
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=2
pkgrel=3
pkgdesc='Statistical Analysis of High-Throughput Genetic Perturbation Screens'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-perturbatr/lilac.yaml
View file

@ -21,5 +21,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/perturbatr
url: https://bioconductor.org/packages/3.15/perturbatr
- alias: r

6
BioArchLinux/r-ppistats/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=ppiStats
_pkgver=1.62.0
pkgname=r-${_pkgname,,}
pkgver=1.62.0
pkgrel=2
pkgrel=3
pkgdesc='Protein-Protein Interaction Statistical Package'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
@ -22,7 +22,7 @@ optdepends=(
r-xtable
r-yeastexpdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('01a9a0f95d0abb2d32d28bf064eb08a087cebc89c8ba2239e9a07801959baf70')
build() {

2
BioArchLinux/r-ppistats/lilac.yaml
View file

@ -10,5 +10,5 @@ repo_depends:
update_on:
- regex: ppiStats_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/ppiStats
url: https://bioconductor.org/packages/3.15/ppiStats
- alias: r

6
BioArchLinux/r-precisiontrialdrawer/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=PrecisionTrialDrawer
_pkgver=1.11.0
pkgname=r-${_pkgname,,}
pkgver=1.11.0
pkgrel=2
pkgrel=3
pkgdesc='A Tool to Analyze and Design NGS Based Custom Gene Panels'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -41,7 +41,7 @@ optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4cc451d5fb6c6aeda70a345421c77d2606f1d23446bfd94eda3dd81f64463cd6')
build() {

2
BioArchLinux/r-precisiontrialdrawer/lilac.yaml
View file

@ -29,5 +29,5 @@ repo_depends:
update_on:
- regex: PrecisionTrialDrawer_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/PrecisionTrialDrawer
url: https://bioconductor.org/packages/3.15/PrecisionTrialDrawer
- alias: r

4
BioArchLinux/r-proteomicsannotationhubdata/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=ProteomicsAnnotationHubData
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=2
pkgrel=3
pkgdesc='Transform public proteomics data resources into Bioconductor Data Structures'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r

2
BioArchLinux/r-proteomicsannotationhubdata/lilac.yaml
View file

@ -15,5 +15,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/ProteomicsAnnotationHubData
url: https://bioconductor.org/packages/3.15/ProteomicsAnnotationHubData
- alias: r

6
BioArchLinux/r-psicquic/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=PSICQUIC
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=2
pkgrel=3
pkgdesc='Proteomics Standard Initiative Common QUery InterfaCe'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Apache')
depends=(
r
@ -21,7 +21,7 @@ depends=(
optdepends=(
r-org.hs.eg.db
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('fd3146e664239fa05413de434774fafe4587b5aac1722c928dec28c156ef733e')
build() {

2
BioArchLinux/r-psicquic/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: PSICQUIC_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/PSICQUIC
url: https://bioconductor.org/packages/3.15/PSICQUIC
- alias: r

6
BioArchLinux/r-pubscore/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=PubScore
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=2
pkgrel=3
pkgdesc='Automatic calculation of literature relevance of genes'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -32,7 +32,7 @@ optdepends=(
r-summarizedexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0d7908ba4121cea855893e2b5945272c97b889c049c49304a42df76af6fe75a1')
build() {

2
BioArchLinux/r-pubscore/lilac.yaml
View file

@ -15,5 +15,5 @@ repo_depends:
update_on:
- regex: PubScore_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/PubScore
url: https://bioconductor.org/packages/3.15/PubScore
- alias: r

6
BioArchLinux/r-pulsedsilac/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=pulsedSilac
_pkgver=1.9.1
pkgname=r-${_pkgname,,}
pkgver=1.9.1
pkgrel=2
pkgrel=3
pkgdesc='Analysis of pulsed-SILAC quantitative proteomics data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -28,7 +28,7 @@ optdepends=(
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8b4a5597eaf54181566e0ff3d6bf5d72d81e71583c6fa7abcd2c1398f4ef68fd')
build() {

2
BioArchLinux/r-pulsedsilac/lilac.yaml
View file

@ -16,5 +16,5 @@ repo_depends:
update_on:
- regex: pulsedSilac_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/pulsedSilac
url: https://bioconductor.org/packages/3.15/pulsedSilac
- alias: r

6
BioArchLinux/r-rgin/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=Rgin
_pkgver=1.15.0
pkgname=r-${_pkgname,,}
pkgver=1.15.0
pkgrel=2
pkgrel=3
pkgdesc='gin in R'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -18,7 +18,7 @@ optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6ae18bf9e748671366ad65c3de03552da49db4cff6ba08601759ef5c9a90bff4')
prepare() {

2
BioArchLinux/r-rgin/lilac.yaml
View file

@ -8,5 +8,5 @@ repo_depends:
update_on:
- regex: Rgin_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/Rgin
url: https://bioconductor.org/packages/3.15/Rgin
- alias: r

4
BioArchLinux/r-rmir/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=RmiR
_pkgver=1.52.0
pkgname=r-${_pkgname,,}
pkgver=1.52.0
pkgrel=2
pkgrel=3
pkgdesc='Package to work with miRNAs and miRNA targets with R'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r

2
BioArchLinux/r-rmir/lilac.yaml
View file

@ -9,5 +9,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/RmiR
url: https://bioconductor.org/packages/3.15/RmiR
- alias: r

6
BioArchLinux/r-rnits/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=Rnits
_pkgver=1.29.0
pkgname=r-${_pkgname,,}
pkgver=1.29.0
pkgrel=2
pkgrel=3
pkgdesc='R Normalization and Inference of Time Series data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
@ -25,7 +25,7 @@ optdepends=(
r-knitr
r-stringr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d034d60c8924200e662073c9e65fcd162b3d8af3ffd8f96cb55e9f9b5874ca54')
build() {

2
BioArchLinux/r-rnits/lilac.yaml
View file

@ -13,5 +13,5 @@ repo_depends:
update_on:
- regex: Rnits_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/Rnits
url: https://bioconductor.org/packages/3.15/Rnits
- alias: r

6
BioArchLinux/r-rpsixml/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=RpsiXML
_pkgver=2.38.0
pkgname=r-${_pkgname,,}
pkgver=2.38.0
pkgrel=2
pkgrel=3
pkgdesc='R interface to PSI-MI 2.5 files'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('LGPL')
depends=(
r
@ -30,7 +30,7 @@ optdepends=(
r-scisi
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('719df8cadff4d9133cde3cd9a7577318673f869452c6e7088e9768dd09bc9674')
build() {

2
BioArchLinux/r-rpsixml/lilac.yaml
View file

@ -13,5 +13,5 @@ repo_depends:
update_on:
- regex: RpsiXML_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/RpsiXML
url: https://bioconductor.org/packages/3.15/RpsiXML
- alias: r

4
BioArchLinux/r-scisi/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=ScISI
_pkgver=1.68.0
pkgname=r-${_pkgname,,}
pkgver=1.68.0
pkgrel=2
pkgrel=3
pkgdesc='In Silico Interactome'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('LGPL')
depends=(
r

2
BioArchLinux/r-scisi/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/ScISI
url: https://bioconductor.org/packages/3.15/ScISI
- alias: r

4
BioArchLinux/r-slgi/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=SLGI
_pkgver=1.56.0
pkgname=r-${_pkgname,,}
pkgver=1.56.0
pkgrel=2
pkgrel=3
pkgdesc='Synthetic Lethal Genetic Interaction'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r

2
BioArchLinux/r-slgi/lilac.yaml
View file

@ -11,5 +11,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/SLGI
url: https://bioconductor.org/packages/3.15/SLGI
- alias: r

6
BioArchLinux/r-sushi/PKGBUILD
View file

@ -4,17 +4,17 @@ _pkgname=Sushi
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=2
pkgrel=3
pkgdesc='Tools for visualizing genomics data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-biomart
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('7804a420ba9d4acfb5fdfbaafe49dba50433f3e4d79b82878779a4f657e6ba29')
build() {

2
BioArchLinux/r-sushi/lilac.yaml
View file

@ -8,5 +8,5 @@ repo_depends:
update_on:
- regex: Sushi_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/Sushi
url: https://bioconductor.org/packages/3.15/Sushi
- alias: r

6
BioArchLinux/r-timeseriesexperiment/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=TimeSeriesExperiment
_pkgver=1.13.0
pkgname=r-${_pkgname,,}
pkgver=1.13.0
pkgrel=2
pkgrel=3
pkgdesc='Analysis for short time-series data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
@ -43,7 +43,7 @@ optdepends=(
r-rmarkdown
r-upsetr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4cb8c6dedf67dc4571f7e4760f05df83b8348508dd2d85457a0da77172efb72d')
build() {

2
BioArchLinux/r-timeseriesexperiment/lilac.yaml
View file

@ -21,5 +21,5 @@ repo_depends:
update_on:
- regex: TimeSeriesExperiment_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/TimeSeriesExperiment
url: https://bioconductor.org/packages/3.15/TimeSeriesExperiment
- alias: r

4
BioArchLinux/r-tofsims/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=tofsims
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=2
pkgrel=3
pkgdesc='Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-tofsims/lilac.yaml
View file

@ -12,5 +12,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/tofsims
url: https://bioconductor.org/packages/3.15/tofsims
- alias: r

6
BioArchLinux/r-tspair/PKGBUILD
View file

@ -4,16 +4,16 @@ _pkgname=tspair
_pkgver=1.53.0
pkgname=r-${_pkgname,,}
pkgver=1.53.0
pkgrel=2
pkgrel=3
pkgdesc='Top Scoring Pairs for Microarray Classification'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r
r-biobase
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b3a00f4f49371e46b138a728d5430f4fb0084dd7816e3418b4d3d61146cdbd13')
build() {

2
BioArchLinux/r-tspair/lilac.yaml
View file

@ -7,5 +7,5 @@ repo_depends:
update_on:
- regex: tspair_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/tspair
url: https://bioconductor.org/packages/3.15/tspair
- alias: r

4
BioArchLinux/r-tsrchitect/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=TSRchitect
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=2
pkgrel=3
pkgdesc='Promoter identification from large-scale TSS profiling data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('GPL')
depends=(
r

2
BioArchLinux/r-tsrchitect/lilac.yaml
View file

@ -20,5 +20,5 @@ repo_depends:
update_on:
- regex: <td>(\d+.\d+.\d+)</td>
source: regex
url: https://bioconductor.org/packages/TSRchitect
url: https://bioconductor.org/packages/3.15/TSRchitect
- alias: r

6
BioArchLinux/r-tvtb/PKGBUILD
View file

@ -4,10 +4,10 @@ _pkgname=TVTB
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=2
pkgrel=3
pkgdesc='TVTB: The VCF Tool Box'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('Artistic2.0')
depends=(
r
@ -42,7 +42,7 @@ optdepends=(
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1af5da609ec7b34cc10f5fe898bebf786f4fac573044fee992c86fe15df4dd00')
build() {

2
BioArchLinux/r-tvtb/lilac.yaml
View file

@ -24,5 +24,5 @@ repo_depends:
update_on:
- regex: TVTB_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/TVTB
url: https://bioconductor.org/packages/3.15/TVTB
- alias: r