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r-*: use metadata checks for several packages

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This commit is contained in:
Pekka Ristola 2024-03-11 15:48:06 +02:00
parent 2d855d1cf3
commit d8bf5f6d19
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GPG key ID: 2C20BE716E05213E
15 changed files with 109 additions and 89 deletions
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22
BioArchLinux/r-gfa/PKGBUILD
View file

@ -3,24 +3,28 @@
_pkgname=GFA _pkgname=GFA
_pkgver=1.0.5 _pkgver=1.0.5
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.0.5 pkgver=${_pkgver//-/.}
pkgrel=1 pkgrel=1
pkgdesc='Group Factor Analysis' pkgdesc="Group Factor Analysis"
arch=('any') arch=(any)
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=$_pkgname"
license=('MIT') license=('MIT')
depends=( depends=(
r r
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4d75b1effb0e31821b07386a900cf68e304c9925c3f2226c45ad2cae4450b7d1') md5sums=('120596244929ae4a15d1266567bc2b75')
b2sums=('e51a23c416022af743db7bbbb39a06638dfede53a1bd9058d3875eb1b4d0e04a52a8fadf334d9a197a9ea0a684d47e547b2b7e30d1701e50ad5dc3611aaed064')
build() { build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" mkdir build
R CMD INSTALL -l build "$_pkgname"
} }
package() { package() {
install -dm0755 "${pkgdir}/usr/lib/R/library" install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
} }
# vim:set ts=2 sw=2 et:

11
BioArchLinux/r-gfa/lilac.py
View file

@ -1,12 +1,13 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
from lilaclib import * from lilaclib import *
import os
import sys
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
from lilac_r_utils import r_pre_build
def pre_build(): def pre_build():
for line in edit_file('PKGBUILD'): r_pre_build(_G)
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build(): def post_build():
git_pkgbuild_commit() git_pkgbuild_commit()

7
BioArchLinux/r-gfa/lilac.yaml
View file

@ -3,7 +3,8 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
update_on: update_on:
- regex: GFA_([\d._-]+).tar.gz - source: rpkgs
source: regex pkgname: GFA
url: https://cran.r-project.org/package=GFA repo: cran
md5: true
- alias: r - alias: r

21
BioArchLinux/r-pma/PKGBUILD
View file

@ -3,24 +3,25 @@
_pkgname=PMA _pkgname=PMA
_pkgver=1.2-3 _pkgver=1.2-3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.2.3 pkgver=${_pkgver//-/.}
pkgrel=1 pkgrel=1
pkgdesc='Penalized Multivariate Analysis' pkgdesc="Penalized Multivariate Analysis"
arch=('x86_64') arch=(x86_64)
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=$_pkgname"
license=('GPL') license=('GPL-2.0-or-later')
depends=( depends=(
r r
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e7572f82c159f34058fdec4c8158d394d6cf68b7978953c8893315e298cc6d06') md5sums=('f4761339585ee1f7a86562b6863cd985')
b2sums=('689f0a63a3d33599ce54f7f8db557f14e78fddfe6a613ca333a02cde48a401356800a7372873ef8bc0b64bf2f29ccd0f08f43e4a442e50189c5ef33479306a13')
build() { build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" mkdir build
R CMD INSTALL -l build "$_pkgname"
} }
package() { package() {
install -dm0755 "${pkgdir}/usr/lib/R/library" install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
} }
# vim:set ts=2 sw=2 et:

11
BioArchLinux/r-pma/lilac.py
View file

@ -1,12 +1,13 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
from lilaclib import * from lilaclib import *
import os
import sys
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
from lilac_r_utils import r_pre_build
def pre_build(): def pre_build():
for line in edit_file('PKGBUILD'): r_pre_build(_G)
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build(): def post_build():
git_pkgbuild_commit() git_pkgbuild_commit()

7
BioArchLinux/r-pma/lilac.yaml
View file

@ -3,7 +3,8 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
update_on: update_on:
- regex: PMA_([\d._-]+).tar.gz - source: rpkgs
source: regex pkgname: PMA
url: https://cran.r-project.org/package=PMA repo: cran
md5: true
- alias: r - alias: r

21
BioArchLinux/r-segmented/PKGBUILD
View file

@ -3,24 +3,25 @@
_pkgname=segmented _pkgname=segmented
_pkgver=2.0-3 _pkgver=2.0-3
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=2.0.3 pkgver=${_pkgver//-/.}
pkgrel=1 pkgrel=1
pkgdesc='Regression Models with Break-Points / Change-Points Estimation' pkgdesc="Regression Models with Break-Points / Change-Points Estimation (with Possibly Random Effects)"
arch=('any') arch=(any)
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=$_pkgname"
license=('GPL') license=('GPL-2.0-or-later')
depends=( depends=(
r r
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e7a88ae270ecb853067fbe26e21477dd369b47cefc443c3af486f2bebed909b9') md5sums=('1ea139e06c62456571430a62cc3cbc8b')
b2sums=('96d706f1df10c0b9ffba604bc1e8d684ebaaf153224f754fad90379b8f240b3d4e78580ea5c761faf989a244e6f7c632619ac6862d64590964e925570dbd78c2')
build() { build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" mkdir build
R CMD INSTALL -l build "$_pkgname"
} }
package() { package() {
install -dm0755 "${pkgdir}/usr/lib/R/library" install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
} }
# vim:set ts=2 sw=2 et:

11
BioArchLinux/r-segmented/lilac.py
View file

@ -1,12 +1,13 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
from lilaclib import * from lilaclib import *
import os
import sys
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
from lilac_r_utils import r_pre_build
def pre_build(): def pre_build():
for line in edit_file('PKGBUILD'): r_pre_build(_G)
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build(): def post_build():
git_pkgbuild_commit() git_pkgbuild_commit()

7
BioArchLinux/r-segmented/lilac.yaml
View file

@ -3,7 +3,8 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
update_on: update_on:
- regex: segmented_([\d._-]+).tar.gz - source: rpkgs
source: regex pkgname: segmented
url: https://cran.r-project.org/package=segmented repo: cran
md5: true
- alias: r - alias: r

21
BioArchLinux/r-tmvnsim/PKGBUILD
View file

@ -4,12 +4,12 @@
_pkgname=tmvnsim _pkgname=tmvnsim
_pkgver=1.0-2 _pkgver=1.0-2
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=1.0.2 pkgver=${_pkgver//-/.}
pkgrel=10 pkgrel=10
pkgdesc='Truncated Multivariate Normal Simulation' pkgdesc="Truncated Multivariate Normal Simulation"
arch=('x86_64') arch=(x86_64)
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=$_pkgname"
license=('GPL') license=('GPL-2.0-only')
depends=( depends=(
r r
) )
@ -17,14 +17,15 @@ makedepends=(
gcc-fortran gcc-fortran
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('97f63d0bab3b240cc7bdbe6e6e74e90ad25a4382a345ee51a26fe3959edeba0f') md5sums=('50a38f2142ee328060aca7d2672b5dcf')
b2sums=('09105660070368676a161201c1e0a8b12ab265353ef51f4fcb4e223b0fa7a3261d531dc8a629620f0c9d17ade5e5689d7e50bdb8a8266ccb8166f54e98408286')
build() { build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" mkdir build
R CMD INSTALL -l build "$_pkgname"
} }
package() { package() {
install -dm0755 "${pkgdir}/usr/lib/R/library" install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
} }
# vim:set ts=2 sw=2 et:

11
BioArchLinux/r-tmvnsim/lilac.py
View file

@ -1,12 +1,13 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
from lilaclib import * from lilaclib import *
import os
import sys
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
from lilac_r_utils import r_pre_build
def pre_build(): def pre_build():
for line in edit_file('PKGBUILD'): r_pre_build(_G)
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build(): def post_build():
git_pkgbuild_commit() git_pkgbuild_commit()

7
BioArchLinux/r-tmvnsim/lilac.yaml
View file

@ -3,7 +3,8 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
update_on: update_on:
- regex: tmvnsim_([\d._-]+).tar.gz - source: rpkgs
source: regex pkgname: tmvnsim
url: https://cran.r-project.org/package=tmvnsim repo: cran
md5: true
- alias: r - alias: r

23
BioArchLinux/r-wesanderson/PKGBUILD
View file

@ -3,11 +3,11 @@
_pkgname=wesanderson _pkgname=wesanderson
_pkgver=0.3.7 _pkgver=0.3.7
pkgname=r-${_pkgname,,} pkgname=r-${_pkgname,,}
pkgver=0.3.7 pkgver=${_pkgver//-/.}
pkgrel=1 pkgrel=1
pkgdesc='A Wes Anderson Palette Generator' pkgdesc="A Wes Anderson Palette Generator"
arch=('any') arch=(any)
url="https://cran.r-project.org/package=${_pkgname}" url="https://cran.r-project.org/package=$_pkgname"
license=('MIT') license=('MIT')
depends=( depends=(
r r
@ -16,15 +16,18 @@ optdepends=(
r-ggplot2 r-ggplot2
) )
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c92e5604e1e149e00f49fd236c6ab8cd09d96106eb14479f7839e6996bf95e4e') md5sums=('8becbb8ab06d2c694c06d0a1b10da95b')
b2sums=('7fb2db1777ccf60ded0fa4e11079705c5c98a566a51ec88c911e5c64573c3a679102e8aa38e967decefe554b0504ea37628e89a391095ee8707e6d9296d49b54')
build() { build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" mkdir build
R CMD INSTALL -l build "$_pkgname"
} }
package() { package() {
install -dm0755 "${pkgdir}/usr/lib/R/library" install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
} }
# vim:set ts=2 sw=2 et:

11
BioArchLinux/r-wesanderson/lilac.py
View file

@ -1,12 +1,13 @@
#!/usr/bin/env python3 #!/usr/bin/env python3
from lilaclib import * from lilaclib import *
import os
import sys
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
from lilac_r_utils import r_pre_build
def pre_build(): def pre_build():
for line in edit_file('PKGBUILD'): r_pre_build(_G)
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build(): def post_build():
git_pkgbuild_commit() git_pkgbuild_commit()

7
BioArchLinux/r-wesanderson/lilac.yaml
View file

@ -3,7 +3,8 @@ maintainers:
- github: starsareintherose - github: starsareintherose
email: kuoi@bioarchlinux.org email: kuoi@bioarchlinux.org
update_on: update_on:
- regex: wesanderson_([\d._-]+).tar.gz - source: rpkgs
source: regex pkgname: wesanderson
url: https://cran.r-project.org/package=wesanderson repo: cran
md5: true
- alias: r - alias: r