r-cytoviewer: init

BioArchLinux/r-cytoviewer/PKGBUILD

@@ -0,0 +1,55 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=cytoviewer
+_pkgver=1.0.1
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="An interactive multi-channel image viewer for R"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-archive
+  r-colourpicker
+  r-cytomapper
+  r-ebimage
+  r-rcolorbrewer
+  r-s4vectors
+  r-shiny
+  r-shinycssloaders
+  r-shinydashboard
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-svglite
+  r-svgpanzoom
+  r-viridis
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-markdown
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('b8b7be3fc0bb988e39029fe1848b4a7a')
+sha256sums=('d47d69ea1417a862420357514d8f607dcc9ab023ab88475a1369c7fec0e56fb2')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-cytoviewer/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-cytoviewer/lilac.yaml

@@ -0,0 +1,27 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-archive
+- r-colourpicker
+- r-cytomapper
+- r-ebimage
+- r-rcolorbrewer
+- r-s4vectors
+- r-shiny
+- r-shinycssloaders
+- r-shinydashboard
+- r-singlecellexperiment
+- r-summarizedexperiment
+- r-svglite
+- r-svgpanzoom
+- r-viridis
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: cytoviewer
+  repo: bioc
+  md5: true
+- alias: r