bayestraits: init

BioArchLinux/bayestraits/PKGBUILD

@@ -0,0 +1,32 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+pkgbase=bayestraits
+_pkg=BayesTraits
+pkgname=('bayestraits' 'bayestraits-mpi')
+pkgver=4.0.1
+pkgrel=0
+arch=('x86_64')
+pkgdesc="A computer package for performing analyses of trait evolution among groups of species \
+	 for which a phylogeny or sample of phylogenies is available"
+url="http://www.evolution.reading.ac.uk/BayesTraits.html"
+license=('GPL')
+makedepends=('gcc' 'nlopt' 'gsl' )
+source=(http://www.evolution.reading.ac.uk/BayesTraitsV${pkgver}/Files/BayesTraitsV${pkgver}-src.tar.gz)
+sha256sums=('115511f550894fcae3c731dfa7458f926e144b0046983a1ff83d22cd4c349953')
+build() {
+  cd ${_pkg}V${pkgver}-src
+  gcc *.c -O3 -lm -lgsl -lgslcblas -lnlopt -o $pkgbase
+  gcc *.c -O3 -lm -lgsl -lgslcblas -lnlopt -DOPENMP_THR -fopenmp -o $pkgbase-mpi
+}
+
+package_bayestraits(){
+  depends=('nlopt' 'gsl' 'cblas' 'glibc' 'gcc-libs')
+  cd ${_pkg}V${pkgver}-src
+  install -Dm755 $pkgname $pkgdir/usr/bin/$pkgname
+}
+
+package_bayestraits-mpi(){
+  depends=('nlopt' 'openmpi' 'gsl' 'cblas' 'glibc' 'gcc-libs')
+  cd ${_pkg}V${pkgver}-src
+  install -Dm755 $pkgname $pkgdir/usr/bin/$pkgname
+}

BioArchLinux/bayestraits/lilac.yaml

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+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+build_prefix: extra-x86_64
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+update_on:
+  - source: regex
+    url: "http://www.evolution.reading.ac.uk/BayesTraits.html"
+    regex: 'BayesTraits V([\d+.]+\d+) - Source Code'