r-alabaster: init

BioArchLinux/r-alabaster/PKGBUILD

@@ -0,0 +1,44 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=alabaster
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Umbrella for the Alabaster Framework"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-alabaster.base
+  r-alabaster.bumpy
+  r-alabaster.mae
+  r-alabaster.matrix
+  r-alabaster.ranges
+  r-alabaster.sce
+  r-alabaster.se
+  r-alabaster.spatial
+  r-alabaster.string
+  r-alabaster.vcf
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('8755db5053974ae9995e52dc59ac6dd1')
+sha256sums=('06aac83a3f6d8ebd0d30bdf2ba94a83ddb7cd44875ce7b5a0831e9863e21b14a')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/r-alabaster/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-alabaster/lilac.yaml

@@ -0,0 +1,21 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-alabaster.base
+- r-alabaster.bumpy
+- r-alabaster.mae
+- r-alabaster.matrix
+- r-alabaster.ranges
+- r-alabaster.sce
+- r-alabaster.se
+- r-alabaster.spatial
+- r-alabaster.string
+- r-alabaster.vcf
+update_on:
+- source: rpkgs
+  pkgname: alabaster
+  repo: bioc
+  md5: true
+- alias: r