r-flowpeaks: use metadata checks

BioArchLinux/r-flowpeaks/PKGBUILD

@@ -1,31 +1,28 @@
-# system requirements: gsl
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=flowPeaks
 _pkgver=1.48.0
 pkgname=r-${_pkgname,,}
-pkgver=1.48.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='An R package for flow data clustering'
+pkgdesc="An R package for flow data clustering"
-arch=('x86_64')
+arch=(x86_64)
-url="https://bioconductor.org/packages/${_pkgname}"
+url="https://bioconductor.org/packages/$_pkgname"
-license=('Artistic2.0')
+license=('Artistic-1.0-Perl')
 depends=(
-  r
   gsl
-)
+  r
-optdepends=(
-  r-flowcore
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('84baaf3c7e8c2cd9790dfd086bf56ce07d448be6255285330dfc92b0b2fafafb')
+md5sums=('f68db373a0d053a7eabd112df80a25f1')
+b2sums=('b1e0e5cea694f73ce830aa3e7f166f5dc17b2d5d2bf1cabb6a7ce6daf91884bdf087c1c998ab8dac340feee8471ed06df1eb14e793ef2d0923f3be33ea49a18c')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-flowpeaks/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(
-        if line.startswith('_pkgver='):
+        _G,
-            line = f'_pkgver={_G.newver}'
+        expect_systemrequirements = "gsl",
-        print(line)
+    )
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-flowpeaks/lilac.yaml

@@ -3,7 +3,12 @@ maintainers:
 - github: starsareintherose
   email: kuoi@bioarchlinux.org
 update_on:
-- regex: flowPeaks_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: flowPeaks
-  url: https://bioconductor.org/packages/flowPeaks
+  repo: bioc
+  md5: true
 - alias: r
+- source: alpmfiles
+  pkgname: gsl
+  filename: usr/lib/libgsl\.so\.([^.]+)
+  repo: extra

lilac-extensions/lilac_r_utils.py

@@ -191,6 +191,7 @@ license_map = {
     "Apache License (>= 2)": "Apache",
     "Apache License (>= 2.0)": "Apache",
     "Apache License 2.0": "Apache",
+    "Artistic-1.0": "Artistic-1.0-Perl",
     "Artistic-2.0": "Artistic2.0",
     "BSD_2_clause + file LICENSE": "BSD",
     "BSD_3_clause + file LICENSE": "BSD",