r-chihaya: init, checkdependency of r-alabaster.matrix

BioArchLinux/r-chihaya/PKGBUILD

@@ -0,0 +1,54 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=chihaya
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Save Delayed Operations to a HDF5 File"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-delayedarray
+  r-hdf5array
+  r-rcpp
+  r-rhdf5
+  zlib
+)
+makedepends=(
+  r-rhdf5lib
+)
+checkdepends=(
+  r-biocsingular
+  r-residualmatrix
+  r-testthat
+)
+optdepends=(
+  r-biocgenerics
+  r-biocsingular
+  r-biocstyle
+  r-knitr
+  r-residualmatrix
+  r-rmarkdown
+  r-s4vectors
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('52743ecddbcf6548ab5ed19e629ad989')
+sha256sums=('75f7c1f7f05c5e88149aab40b2a9d5931f22901a4fb0d1d529704006c57c0718')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-chihaya/lilac.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "C++17, GNU make",
+    )
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-chihaya/lilac.yaml

@@ -0,0 +1,25 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-delayedarray
+- r-hdf5array
+- r-rcpp
+- r-rhdf5
+repo_makedepends:
+- r-rhdf5lib
+- r-biocsingular
+- r-residualmatrix
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: chihaya
+  repo: bioc
+  md5: true
+- alias: r
+- source: alpm
+  alpm: zlib
+  repo: core
+  provided: libz.so
+  strip_release: true