hybpiper: init

BioArchLinux/hybpiper/PKGBUILD

@@ -0,0 +1,26 @@
+# Maintainer: malacology <guoyizhang at malacology dot net>
+_pkgname=HybPiper
+pkgname=${_pkgname,,}
+pkgver=2.1.6
+pkgrel=0
+url="https://github.com/mossmatters/$_pkgname"
+pkgdesc="Recovering genes from targeted sequence capture data \
+	 https://doi.org/10.3732/apps.1600016"
+arch=('x86_64')
+license=('GPL-3.0-only')
+depends=('python'
+	'python-seaborn' 'python-pebble' 'python-matplotlib' 'python-progressbar' 'python-scipy' 'python-scipy' 'python-pandas' 'python-biopython' 'python-psutil'
+       	'diamond' 'exonerate' 'blast+' 'diamond' 'bwa' 'bbmap' 'spades' 'parallel' 'samtools' 'mafft')
+makedepends=('python-setuptools')
+source=("$pkgname-$pkgver.tar.gz::${url}/archive/refs/tags/v${pkgver}.tar.gz")
+sha256sums=('f6a8ef366d924508c953a4cedc660442694dfa41ec2180da32799be5094fe51f')
+
+build() {
+  cd $srcdir/$_pkgname-$pkgver
+  python setup.py build
+}
+
+package() {
+  cd $srcdir/$_pkgname-$pkgver
+  python setup.py install --root="$pkgdir" --optimize=1
+}

BioArchLinux/hybpiper/lilac.yaml

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+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+pre_build_script: |
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+  update_aur_repo()
+update_on:
+  - source: github
+    github: mossmatters/HybPiper
+    use_max_tag: true
+    prefix: "v"
+  - alias: python
+repo_depends:
+  - python-pebble
+  - diamond
+  - exonerate
+  - blast+
+  - diamond
+  - bwa
+  - bbmap
+  - spades
+  - parallel
+  - samtools
+  - mafft