preseq: init

BioArchLinux/preseq/PKGBUILD

@@ -0,0 +1,29 @@
+# Maintainer: Grey Christoforo <first name [at] last name [dot] net>
+
+pkgname=preseq
+pkgver=3.1.2
+pkgrel=1
+pkgdesc="A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth."
+arch=('x86_64')
+url="http://smithlabresearch.org/software/preseq/"
+depends=('gsl' 'htslib')
+makedepends=('make')
+license=('GPL3')
+source=("https://github.com/smithlabcode/preseq/releases/download/v${pkgver}/preseq-${pkgver}.tar.gz")
+md5sums=('fca0d3e94ce2b557d3b2d6f374498bcc')
+
+prepare() {
+  cd "${pkgname}-${pkgver}"
+  ./configure --prefix="${pkgdir}/usr" --enable-hts
+}
+
+build() {
+  cd "${pkgname}-${pkgver}"
+  make all
+}
+
+package() {
+  cd "${pkgname}-${pkgver}"
+  make install
+}
+

BioArchLinux/preseq/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()

BioArchLinux/preseq/lilac.yaml

@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+update_on:
+  - source: github
+    github: smithlabcode/preseq
+    use_latest_release: true
+    prefix: 'v'
+  - alias: alpm-lilac
+    alpm: htslib
+    strip_release: true
+repo_depends:
+  - htslib