r-sqldataframe: fix depends, use metadata checks

BioArchLinux/r-adbcdrivermanager/PKGBUILD

@@ -0,0 +1,39 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=adbcdrivermanager
+_pkgver=0.11.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="'Arrow' Database Connectivity ('ADBC') Driver Manager"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=(Apache)
+depends=(
+  r-nanoarrow
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-testthat
+  r-withr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('dd000875d9a46549f07a4cf090ba5b37')
+b2sums=('b222c9a4541318cb7af9746490c8392ceddc3618b05805c32896f28be7d6dc904b5c08b7be6acdbf386084e663075f95821d0cd8da227e75ce41bb0d651dd69c')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-adbcdrivermanager/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-adbcdrivermanager/lilac.yaml

@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-nanoarrow
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: adbcdrivermanager
+  repo: cran
+  md5: true
+- alias: r

BioArchLinux/r-duckdb/PKGBUILD

@@ -0,0 +1,56 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=duckdb
+_pkgver=0.10.2
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="DBI Package for the DuckDB Database Management System"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('MIT')
+depends=(
+  r-dbi
+)
+checkdepends=(
+  r-adbcdrivermanager
+  r-arrow
+  r-dbplyr
+  r-dplyr
+  r-testthat
+)
+optdepends=(
+  r-adbcdrivermanager
+  r-arrow
+  r-bit64
+  r-callr
+  r-dbitest
+  r-dbplyr
+  r-dplyr
+  r-rlang
+  r-testthat
+  r-tibble
+  r-vctrs
+  r-withr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('21ba242d403bb35d30cb86c88770a0e9')
+b2sums=('8c14e2eed3d9744629611a82123213770c7ba327046851009f8de0feefb10c6abbb6f9bdab41c3af98a46a5290900a78387b326781209428f840100869d5afa1')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/r-duckdb/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-duckdb/lilac.yaml

@@ -0,0 +1,18 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-dbi
+repo_makedepends:
+- r-adbcdrivermanager
+- r-arrow
+- r-dbplyr
+- r-dplyr
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: duckdb
+  repo: cran
+  md5: true
+- alias: r

BioArchLinux/r-sqldataframe/PKGBUILD

@@ -1,43 +1,38 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=SQLDataFrame
-_pkgver=1.16.1
+_pkgver=1.18.0
 pkgname=r-${_pkgname,,}
-pkgver=1.16.1
-pkgrel=2
-pkgdesc='Representation of SQL database in DataFrame metaphor'
-arch=('any')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgver=${_pkgver//-/.}
+pkgrel=0
+pkgdesc="Representation of SQL tables in DataFrame metaphor"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('LGPL-3.0-or-later')
 depends=(
-  r
   r-biocgenerics
   r-dbi
-  r-dbplyr
-  r-dplyr
-  r-lazyeval
+  r-delayedarray
+  r-duckdb
   r-rsqlite
   r-s4vectors
-  r-tibble
 )
 optdepends=(
-  r-bigrquery
-  r-delayedarray
-  r-genomicranges
+  r-biocstyle
   r-knitr
   r-rmarkdown
-  r-rmysql
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('d48c2bcaa4fade62ead21689d2bfcfc8d7e835291ee25ec5ff6b69db0021354d')
+md5sums=('d3f3b42d554d7262bb6dedc1d362d9b3')
+b2sums=('3953beef5982876d7d55f6f28dbff4e27cce3c6fc8c2ea8fbc73d2bd236d15b5755da43bc72fa02e43c2ef5f2fd409106c34ae4d75f4f54bd1c461a3d298fa3f')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-sqldataframe/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(
+        _G,
+        expect_license = "LGPL (>= 3); File LICENSE",
+    )
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-sqldataframe/lilac.yaml

@@ -5,14 +5,13 @@ maintainers:
 repo_depends:
 - r-biocgenerics
 - r-dbi
-- r-dbplyr
-- r-dplyr
-- r-lazyeval
+- r-delayedarray
+- r-duckdb
 - r-rsqlite
 - r-s4vectors
-- r-tibble
 update_on:
-- regex: SQLDataFrame_([\d._-]+).tar.gz
-  source: regex
-  url: https://bioconductor.org/packages/SQLDataFrame
+- source: rpkgs
+  pkgname: SQLDataFrame
+  repo: bioc
+  md5: true
 - alias: r