r-cellxgenedp: use metadata checks

BioArchLinux/r-cellxgenedp/PKGBUILD

@@ -1,17 +1,16 @@
-# system requirements: C++14
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=cellxgenedp
 _pkgver=1.4.1
 pkgname=r-${_pkgname,,}
-pkgver=1.4.1
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Discover and Access Single Cell Data Sets in the cellxgene Data Portal'
-arch=('x86_64')
+pkgdesc="Discover and Access Single Cell Data Sets in the cellxgene Data Portal"
+arch=(any)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('Artistic2.0')
+license=(Artistic2.0)
 depends=(
-  r
   r-curl
   r-dplyr
   r-dt
@@ -20,6 +19,10 @@ depends=(
   r-rjsoncons
   r-shiny
 )
+checkdepends=(
+  r-mockery
+  r-testthat
+)
 optdepends=(
   r-biocstyle
   r-hdf5array
@@ -31,14 +34,20 @@ optdepends=(
   r-zellkonverter
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('f63ddf14244159c5cceb6a93f694f645')
 sha256sums=('b2def1afa6eef3338e722cd4c8ce057a2aaa78de7dcb82e383e7f550abf5b725')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-cellxgenedp/lilac.py

@@ -1,12 +1,14 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-cellxgenedp/lilac.yaml

@@ -1,7 +1,7 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-curl
 - r-dplyr
@@ -10,8 +10,12 @@ repo_depends:
 - r-jsonlite
 - r-rjsoncons
 - r-shiny
+repo_makedepends:
+- r-mockery
+- r-testthat
 update_on:
-- regex: cellxgenedp_([\d._-]+).tar.gz
-  source: regex
-  url: https://bioconductor.org/packages/cellxgenedp
+- source: rpkgs
+  pkgname: cellxgenedp
+  repo: bioc
+  md5: true
 - alias: r