From fc0e39a9a41e156926de3a894eab4a2e86d21113 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Sun, 17 Apr 2022 11:21:08 +0100
Subject: [PATCH] use latest version

---
 BioArchLinux/biobambam/PKGBUILD   | 10 +++++-----
 BioArchLinux/biobambam/lilac.yaml |  2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/BioArchLinux/biobambam/PKGBUILD b/BioArchLinux/biobambam/PKGBUILD
index 143adc527a..4e69a98709 100644
--- a/BioArchLinux/biobambam/PKGBUILD
+++ b/BioArchLinux/biobambam/PKGBUILD
@@ -1,19 +1,19 @@
 # Maintainer: Clint Valentine <valentine.clint@gmail.com>
 
 pkgname=biobambam
-pkgver=2.0.89_release_20180518145034
+pkgver=2.0.183_release_20210802180148
 pkgrel=1
-_release=20180301132713
 pkgdesc="BAM file pre-processing utilities for bioinformatics."
 arch=('x86_64')
 url="https://github.com/gt1/biobambam2"
 license=('GPL3')
-makedepends=('libmaus')
-source=(https://github.com/gt1/biobambam2/archive/refs/tags/${pkgver//_/-}.tar.gz)
-sha256sums=('292a99d356f4523b31a18c79441fc387184ee13adf79682b040f88b4b2a05d27')
+makedepends=('libmaus' 'autoconf' 'make' 'boost')
+source=(https://gitlab.com/german.tischler/biobambam2/-/archive/${pkgver//_/-}/${pkgname}2-${pkgver//_/-}.tar.gz)
+sha256sums=('8712ceac509c389111b01dc3429f673dc0f8b77cb2bc48a1ebcf17f6888b2945')
 
 build() {
   cd "${srcdir}"/"${pkgname}2"-"${pkgver//_/-}"
+  autoreconf -i -f
   ./configure --prefix="${pkgdir}"/usr
 }
 
diff --git a/BioArchLinux/biobambam/lilac.yaml b/BioArchLinux/biobambam/lilac.yaml
index 236bb1d30d..d1c2da7267 100644
--- a/BioArchLinux/biobambam/lilac.yaml
+++ b/BioArchLinux/biobambam/lilac.yaml
@@ -4,6 +4,6 @@ maintainers:
     email: starsareintherose@outlook.com
 update_on:
   - source: cmd
-    cmd: curl -sS https://github.com/gt1/biobambam2/tags | grep '\-release-' | head -n 1 | sed 's/\// /g' | sed 's/"/ /g' | awk '{print $7}' | sed 's/-/_/g'
+    cmd: curl -sS https://gitlab.com/german.tischler/biobambam2/-/tags | grep '\-release-' | head -n 1 | sed 's/</ /g' | sed 's/>/ /g' | awk '{print $5}' | sed 's/-/_/g'
 repo_depends:
   - libmaus