r-atacseqtfea: init

BioArchLinux/r-atacseqtfea/PKGBUILD

@@ -0,0 +1,49 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=ATACseqTFEA
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Transcription Factor Enrichment Analysis for ATAC-seq"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biocgenerics
+  r-dplyr
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-ggplot2
+  r-ggrepel
+  r-iranges
+  r-limma
+  r-motifmatchr
+  r-pracma
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+  r-tfbstools
+)
+optdepends=(
+  r-atacseqqc
+  r-biocstyle
+  r-bsgenome.drerio.ucsc.danrer10
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('30284cc31687d97f23d2a7c023e8561d')
+sha256sums=('5c7e8e3079bb9b1aa8b836d3824cd93d26b77fe310eb43f7585d181e1edce2b3')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-atacseqtfea/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-atacseqtfea/lilac.yaml

@@ -0,0 +1,26 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-biocgenerics
+- r-dplyr
+- r-genomeinfodb
+- r-genomicalignments
+- r-genomicranges
+- r-ggplot2
+- r-ggrepel
+- r-iranges
+- r-limma
+- r-motifmatchr
+- r-pracma
+- r-rsamtools
+- r-s4vectors
+- r-summarizedexperiment
+- r-tfbstools
+update_on:
+- source: rpkgs
+  pkgname: ATACseqTFEA
+  repo: bioc
+  md5: true
+- alias: r