r-gosorensen: init

BioArchLinux/r-gosorensen/PKGBUILD

@@ -0,0 +1,36 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=goSorensen
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-clusterprofiler
+  r-go.db
+  r-goprofiles
+  r-org.hs.eg.db
+  r-stringr
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('8fa5cc982341291dd857ab340abe4c73')
+sha256sums=('bd11519691515013723337c1533467731ffe7b727cc5221bc19f65707cd6d1e0')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-gosorensen/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-gosorensen/lilac.yaml

@@ -0,0 +1,16 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-clusterprofiler
+- r-go.db
+- r-goprofiles
+- r-org.hs.eg.db
+- r-stringr
+update_on:
+- source: rpkgs
+  pkgname: goSorensen
+  repo: bioc
+  md5: true
+- alias: r