diff --git a/BioArchLinux/stacks/PKGBUILD b/BioArchLinux/stacks/PKGBUILD new file mode 100644 index 0000000000..1e286b4cce --- /dev/null +++ b/BioArchLinux/stacks/PKGBUILD @@ -0,0 +1,26 @@ +#Maintainer: Guoyi Zhang + +pkgname=stacks +pkgver=2.68 +pkgrel=0 +pkgdesc="building loci from short-read sequences https://dx.doi.org/10.1111/mec.15253" +arch=('x86_64') +url="https://catchenlab.life.illinois.edu/stacks/" +depends=('gcc-libs' 'r' 'perl' 'python') +makedepends=('make' 'gcc' 'openmpi') +optdepends=('openmpi: for parallel') +license=('GPL-3.0-or-later') +source=("https://catchenlab.life.illinois.edu/stacks/source/stacks-${pkgver}.tar.gz") +md5sums=('SKIP') + +build() { + cd "${pkgname}-${pkgver}" + ./configure --prefix="${pkgdir}/usr" + make all +} + +package() { + cd "${pkgname}-${pkgver}" + make install +} + diff --git a/BioArchLinux/stacks/lilac.yaml b/BioArchLinux/stacks/lilac.yaml new file mode 100644 index 0000000000..7338084050 --- /dev/null +++ b/BioArchLinux/stacks/lilac.yaml @@ -0,0 +1,13 @@ +build_prefix: extra-x86_64 +maintainers: + - github: starsareintherose + email: kuoi@bioarchlinux.org +pre_build_script: | + update_pkgver_and_pkgrel(_G.newver) +post_build_script: | + git_pkgbuild_commit() + update_aur_repo() +update_on: +- source: regex + url: "https://catchenlab.life.illinois.edu/stacks/" + regex: href="/stacks/source/stacks-(\d+.\d+).tar.gz"