add some aur packages

BioArchLinux/r-cnorm/PKGBUILD

@@ -0,0 +1,37 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+_pkgname=cNORM
+_pkgver=3.0.2
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Continuous Norming'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('AGPL')
+depends=(
+  r
+  r-latticeextra
+  r-leaps
+)
+optdepends=(
+  r-foreign
+  r-knitr
+  r-readxl
+  r-rmarkdown
+  r-shiny
+  r-shinycssloaders
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('31231a0612915ee5171676b28273f82acdc8914bd6385fc9e7b17f930e66c91a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-cnorm/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-cnorm/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-latticeextra
+  - r-leaps
+update_on:
+  - regex: cNORM_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=cNORM

BioArchLinux/r-fsa/PKGBUILD

@@ -0,0 +1,50 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+
+_pkgname=FSA
+_pkgver=0.9.3
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Simple Fisheries Stock Assessment Methods'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-car
+  r-dunn.test
+  r-lmtest
+  r-plotrix
+  r-withr
+)
+optdepends=(
+  r-covr
+  r-desctools
+  r-dplyr
+  r-fishmethods
+  r-fsadata
+  r-knitr
+  r-marked
+  r-nlme
+  r-nlstools
+  r-pkgdown
+  r-plyr
+  r-psych
+  r-rcapture
+  r-rmarkdown
+  r-testthat
+  r-tibble
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3c102c2bab42ae3ffbf1180eaca4d48814f11fd0af3f684ef2f68593430a5d81')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-fsa/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-fsa/lilac.yaml

@@ -0,0 +1,13 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-car
+  - r-dunn.test
+  - r-lmtest
+  - r-plotrix
+  - r-withr
+update_on:
+  - regex: FSA_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=FSA

BioArchLinux/r-gbrd/PKGBUILD

@@ -0,0 +1,27 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+
+_pkgname=gbRd
+_pkgver=0.4-11
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Utilities for processing Rd objects and files'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0251f6dd6ca987a74acc4765838b858f1edb08b71dbad9e563669b58783ea91b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-gbrd/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-gbrd/lilac.yaml

@@ -0,0 +1,7 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+update_on:
+  - regex: gbRd_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=gbRd

BioArchLinux/r-metadynminer/PKGBUILD

@@ -0,0 +1,31 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+
+_pkgname=metadynminer
+_pkgver=0.1.7
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc="Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'"
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-rcpp
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f03715709ef663f30793bf365b3586aa8be733113a73c49068e2a0a131360832')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-metadynminer/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-metadynminer/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-rcpp
+update_on:
+  - regex: metadynminer_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=metadynminer

BioArchLinux/r-metadynminer3d/PKGBUILD

@@ -0,0 +1,34 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+
+_pkgname=metadynminer3d
+_pkgver=0.0.2
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc="Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files from 'Plumed'"
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-metadynminer
+  r-misc3d
+  r-rcpp
+  r-rgl
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('55e2b7a17e08f0ebcfbb621ea0c03ebce73576c9de2409491a3be353aed32cf8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-metadynminer3d/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-metadynminer3d/lilac.yaml

@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-metadynminer
+  - r-misc3d
+  - r-rcpp
+  - r-rgl
+update_on:
+  - regex: metadynminer3d_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=metadynminer3d

BioArchLinux/r-rcompanion/PKGBUILD

@@ -0,0 +1,33 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Robert Greener <me@r0bert.dev>
+
+_pkgname=rcompanion
+_pkgver=2.4.16
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Functions to Support Extension Education Program Evaluation'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-coin
+  r-desctools
+  r-lmtest
+  r-multcompview
+  r-nortest
+  r-plyr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f4d2f628e44c7c0b19105b5a5f97c78bd88c4fe579eb34dd6696ee6d69469227')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-rcompanion/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-rcompanion/lilac.yaml

@@ -0,0 +1,14 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+repo_depends:
+  - r-coin
+  - r-desctools
+  - r-lmtest
+  - r-multcompview
+  - r-nortest
+  - r-plyr
+update_on:
+  - regex: rcompanion_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=rcompanion

BioArchLinux/r-sciplot/PKGBUILD

@@ -0,0 +1,27 @@
+# Maintainer: sukanka <su975853527@gmail.com>
+# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
+
+_pkgname=sciplot
+_pkgver=1.2-0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Scientific Graphing Functions for Factorial Designs'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('738fa4ddc1c1d20f5467376d9278f6461a405617904b871a378e94ade563ff24')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-sciplot/lilac.py

@@ -0,0 +1,13 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-sciplot/lilac.yaml

@@ -0,0 +1,7 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: sukanka
+update_on:
+  - regex: sciplot_([\d._-]+).tar.gz
+    source: regex
+    url: https://cran.r-project.org/package=sciplot