mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
502630628b
commit
ff581fb1f6
24 changed files with 187 additions and 154 deletions
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@ -6,12 +6,12 @@
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_pkgname=carData
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_pkgver=3.0-5
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pkgname=r-${_pkgname,,}
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pkgver=3.0.5
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pkgver=${_pkgver//-/.}
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pkgrel=11
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pkgdesc='Companion to Applied Regression Data Sets'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Companion to Applied Regression Data Sets"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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)
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@ -19,14 +19,15 @@ optdepends=(
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r-car
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('02e77159b33e3afb8cd9cfab11cf5a996a93175f924b07d991ce44bc6e16451a')
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md5sums=('88dc01e1d94d67652d4c4c38d33a8981')
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b2sums=('dee8f9b5e73cbb785f445b70b6ae88ca8c7303bc4b361943e937596bcc355374856b64c61b9d325484670c779a6ff6df5a8912ee8f65d3afdbf2b1546f68409a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: carData_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=carData
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- source: rpkgs
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pkgname: carData
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repo: cran
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md5: true
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- alias: r
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@ -3,27 +3,27 @@
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_pkgname=fastICA
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_pkgver=1.2-4
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pkgname=r-${_pkgname,,}
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pkgver=1.2.4
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='FastICA Algorithms to Perform ICA and Projection Pursuit'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="FastICA Algorithms to Perform ICA and Projection Pursuit"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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blas
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lapack
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r
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)
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optdepends=(
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r-mass
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('ed6988ea410d1a75bf4f4925edcac5a660a417e33ba0a939bc0351e534df5f2f')
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md5sums=('0cc1a6b1e7c27d7c410cdfb0f0cb9e5a')
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b2sums=('3a85ea80ab8cc44764996bb17b6f1a72e7671f9700b70f9152d2b69ee76181f00d27ea3d491a7d2ffd3ff65a73fe344a0da2a33785f6d7e5566deac459ce2d92')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,16 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: fastICA_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=fastICA
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- source: rpkgs
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pkgname: fastICA
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repo: cran
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md5: true
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- alias: r
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- source: alpmfiles
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pkgname: blas
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filename: usr/lib/libblas\.so\.([^.]+)
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repo: extra
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- source: alpmfiles
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pkgname: lapack
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filename: usr/lib/liblapack\.so\.([^.]+)
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repo: extra
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@ -3,12 +3,12 @@
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_pkgname=ProtGenerics
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_pkgver=1.34.0
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pkgname=r-${_pkgname,,}
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pkgver=1.34.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Generic infrastructure for Bioconductor mass spectrometry packages'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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pkgdesc="Generic infrastructure for Bioconductor mass spectrometry packages"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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depends=(
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r
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)
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@ -16,14 +16,15 @@ optdepends=(
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('35a042777fdebf518d0b6223739aac8e6b78f01acac3c4eaff36a96ecd515bbe')
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md5sums=('5d55c00588169aa089bb457e2d94669a')
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b2sums=('2502effe500375cce60b36746f54d10f5780e5f052aa0da190a6bac5ca96071ee3647e275df1eafaf6f9f84e57947ded49151ffef218a0f884a40282fc4e8a34')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: ProtGenerics_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/ProtGenerics
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- source: rpkgs
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pkgname: ProtGenerics
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repo: bioc
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md5: true
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- alias: r
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@ -3,30 +3,26 @@
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_pkgname=Rmpi
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_pkgver=0.7-2
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pkgname=r-${_pkgname,,}
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pkgver=0.7.2
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Interface (Wrapper) to MPI (Message-Passing Interface)'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Interface (Wrapper) to MPI (Message-Passing Interface)"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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openmpi
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)
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makedepends=(
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openssh
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inetutils
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nvidia-utils
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('8591fa9f50de52535a32b36e7ed142c6ca4e03fdfdbef79a1e27a63ed5322eef')
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md5sums=('ba8538ddb5d4c12863d5b16e3d64f290')
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b2sums=('c59054786e90a5d98da365fcee3ccec55399dfe039feacfe2530850505c7ded50d37c41328a3393cd76ec18ecf21fcb0ad0614eca4b400996ac4924c8521cab8')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,13 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: Rmpi_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=Rmpi
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- source: rpkgs
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pkgname: Rmpi
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repo: cran
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md5: true
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- alias: r
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- source: alpm
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alpm: openmpi
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repo: extra
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provided: libmpi.so
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strip_release: true
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@ -3,24 +3,25 @@
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_pkgname=sigclust
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_pkgver=1.1.0.1
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pkgname=r-${_pkgname,,}
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pkgver=1.1.0.1
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pkgver=${_pkgver//-/.}
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pkgrel=3
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pkgdesc='Statistical Significance of Clustering'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Statistical Significance of Clustering"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('eacdb4b5598e64722e515e749a3ff3dc14e8a296836afdd0a17ab153a96a72e0')
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md5sums=('bd1316dcfef8be978b8bc8a0ac533ed2')
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b2sums=('67199a0fb4ec99693574cfec10646d8898c5a05b805ef0789d5f79e1c941e6b41babbef3b5524931713f27def8d4020fccc991979990b2f496432d29fe6c6b67')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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|
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
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from lilac_r_utils import r_pre_build
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|
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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|
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|
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|
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
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update_on:
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- regex: sigclust_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=sigclust
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- source: rpkgs
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pkgname: sigclust
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repo: cran
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md5: true
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- alias: r
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|
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@ -3,24 +3,25 @@
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_pkgname=som
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_pkgver=0.3-5.1
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pkgname=r-${_pkgname,,}
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pkgver=0.3.5.1
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pkgver=${_pkgver//-/.}
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pkgrel=8
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pkgdesc='Self-Organizing Map'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Self-Organizing Map"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL3)
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depends=(
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a6f4c0e5b36656b7a8ea144b057e3d7642a8b71972da387a7133f3dd65507fb9')
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md5sums=('802a5a80902579354ce3420faeeeb756')
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b2sums=('ca8fd769ee84497051ef0f14e288dbf1bd05e17a1d72d5b0520b8b0771e36e58f17ed41dfe771f3a3654e77610b365789e74b45e5d2eb4e274ba55adc2caa905')
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|
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build() {
|
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
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mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
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}
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|
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package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: som_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=som
|
||||
- source: rpkgs
|
||||
pkgname: som
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,12 +3,12 @@
|
|||
_pkgname=sparsebnUtils
|
||||
_pkgver=0.0.8
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=0.0.8
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=6
|
||||
pkgdesc='Utilities for Learning Sparse Bayesian Networks'
|
||||
arch=('any')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Utilities for Learning Sparse Bayesian Networks"
|
||||
arch=(any)
|
||||
url="https://cran.r-project.org/package=$_pkgname"
|
||||
license=(GPL)
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
|
|
@ -21,14 +21,15 @@ optdepends=(
|
|||
r-testthat
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('7a03725cebb3a6105248c5a2df6e2a9dc4c55facf382bab438918d3c468337f4')
|
||||
md5sums=('1517d36ea36652702bd7b113b0b776b6')
|
||||
b2sums=('1aa8d00b9797fb30e51b163df73acafee5650e59d7665d5f6676c58a5764dfa10e851fbc0111f9138a13146b6134918c1c17034bb8b7ffe2779d2f82ba7d3f83')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: sparsebnUtils_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=sparsebnUtils
|
||||
- source: rpkgs
|
||||
pkgname: sparsebnUtils
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,12 +3,12 @@
|
|||
_pkgname=viridisLite
|
||||
_pkgver=0.4.2
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=0.4.2
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Colorblind-Friendly Color Maps (Lite Version)'
|
||||
arch=('any')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('MIT')
|
||||
pkgdesc="Colorblind-Friendly Color Maps (Lite Version)"
|
||||
arch=(any)
|
||||
url="https://cran.r-project.org/package=$_pkgname"
|
||||
license=(MIT)
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
|
|
@ -19,15 +19,18 @@ optdepends=(
|
|||
r-testthat
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('893f111d31deccd2cc959bc9db7ba2ce9020a2dd1b9c1c009587e449c4cce1a1')
|
||||
md5sums=('059e754e58fd6735dd50a1799f95c8c1')
|
||||
b2sums=('3249989d4fad37135841767f3996422121dfefb826bcd8528a44409ec251e156cd76685f00ad2ebcf6793f24a8a5a6761b74124ccb3394b04a528f976666e33e')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
|
||||
install -d "$pkgdir/usr/share/licenses/$pkgname"
|
||||
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: viridisLite_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=viridisLite
|
||||
- source: rpkgs
|
||||
pkgname: viridisLite
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue