mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
b28318baa5
commit
ff66a2377e
42 changed files with 319 additions and 261 deletions
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@ -3,24 +3,25 @@
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_pkgname=iASeq
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_pkgver=1.46.0
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pkgname=r-${_pkgname,,}
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pkgver=1.46.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='iASeq: integrating multiple sequencing datasets for detecting allele-specific events'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="integrating multiple sequencing datasets for detecting allele-specific events"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('35f0563d9c1573290e1e726ff16099c580239e11c13577a39632e59634c29478')
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md5sums=('3086632b16254c5b1f22c4f376bd43a7')
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b2sums=('9c61497d515671c501d808184d8d64e6ef5d204f6d6ea24e25f4e36d8004dde49cbfadcdd62aa63122041035e9907e56876304f05b7b92dba579e527d5a800e9')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: iASeq_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/iASeq
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- source: rpkgs
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pkgname: iASeq
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repo: bioc
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md5: true
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- alias: r
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@ -3,31 +3,34 @@
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_pkgname=iClusterPlus
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_pkgver=1.38.0
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pkgname=r-${_pkgname,,}
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pkgver=1.38.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Integrative clustering of multi-type genomic data'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Integrative clustering of multi-type genomic data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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blas
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lapack
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r
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)
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makedepends=(
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gcc-fortran
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)
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optdepends=(
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r-biocgenerics
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r-runit
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)
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makedepends=(
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gcc-fortran
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('414f66fd6513a6563a7b219b6e3055276fc6a68f7e36134810e9c93088e1a65c')
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md5sums=('133b682823ec6ab41f6f6579413d461d')
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b2sums=('3d21f898f84ead21e97fbabe5ef0219a692097263c3710a98d58110278ba04d8d4131671a886c3cc3a570894a8e22a1baf45d8eed331c91ddf25d4fc7de7f0c3')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,16 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: iClusterPlus_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/iClusterPlus
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- source: rpkgs
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pkgname: iClusterPlus
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repo: bioc
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md5: true
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- alias: r
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- source: alpmfiles
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pkgname: blas
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filename: usr/lib/libblas\.so\.([^.]+)
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repo: extra
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- source: alpmfiles
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pkgname: lapack
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filename: usr/lib/liblapack\.so\.([^.]+)
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repo: extra
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@ -3,24 +3,25 @@
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_pkgname=iSeq
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_pkgver=1.54.0
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pkgname=r-${_pkgname,,}
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pkgver=1.54.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('2f0f4845e0e5a25a1cf14c7209b833e85d0541f8f9986978c2946e2f0bed86d5')
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md5sums=('1798c4c248175516afc66ee7f45d5051')
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b2sums=('bdefae2fd5cce0aee3203bc2d3969e944ba515b2dfaca503970707c5a1b5f43a0bff27cd5a23ed13fd992565d71448674af6975e4e7f3f46dee51164d59646b6')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
|
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: iSeq_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/iSeq
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- source: rpkgs
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pkgname: iSeq
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repo: bioc
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=ISoLDE
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_pkgver=1.30.0
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pkgname=r-${_pkgname,,}
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pkgver=1.30.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Integrative Statistics of alleLe Dependent Expression'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Integrative Statistics of alleLe Dependent Expression"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('edbace394f931c0257a5c4e500be696a13183c30c1fa2383130808dd7ccb1dad')
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md5sums=('448414b250ff7c903395638de3688411')
|
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b2sums=('bcb63ed3ab162c5d194a2f4470cb9fc455a295dafdeaacfdae0ff24fda7c6278c9684873ecada6249d44ee45afe7d87a295e7de351b00c84029043bc14c9cf59')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: ISoLDE_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/ISoLDE
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- source: rpkgs
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pkgname: ISoLDE
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repo: bioc
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md5: true
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- alias: r
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@ -3,12 +3,12 @@
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_pkgname=KBoost
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_pkgver=1.10.0
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pkgname=r-${_pkgname,,}
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pkgver=1.10.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Inference of gene regulatory networks from gene expression data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Inference of gene regulatory networks from gene expression data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only OR GPL-3.0-only')
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depends=(
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r
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)
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@ -18,14 +18,15 @@ optdepends=(
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('1132da444f04934200dd92483b478116c51d9a995b698648e88b97b109086de9')
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md5sums=('853c93af3367a8af56b60aea8495f44b')
|
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b2sums=('90e22d4770056298a98d2554cdf6cfaf5918d971e6ddbb96ea1b0e7cf21666c2e5a0cc4fd50a4d3708bc6489fe7dba9268a0df25bebd0772dab6d076ccdef0a5')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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|
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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|
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|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
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|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: KBoost_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/KBoost
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- source: rpkgs
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pkgname: KBoost
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repo: bioc
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md5: true
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- alias: r
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|
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@ -3,12 +3,12 @@
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_pkgname=LBE
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_pkgver=1.70.0
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pkgname=r-${_pkgname,,}
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pkgver=1.70.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Estimation of the false discovery rate.'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Estimation of the false discovery rate"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r
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)
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|
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@ -16,14 +16,15 @@ optdepends=(
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r-qvalue
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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||||
sha256sums=('99990d21cff0a2b427afbade12547c637c5aeb63a494f956b6d6f0d97a7e723b')
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||||
md5sums=('36559f365f1dbd53056e6b43bc1e06e9')
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b2sums=('8c10241e146be6fc61c48ba4ac7e6a7b4691c5499a89d920c9b64e7c5a1729a2d3ed5d265a853402b247427fe2ad4e0d8f789bc70fd504695d1673da7006439a')
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|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: LBE_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/LBE
|
||||
- source: rpkgs
|
||||
pkgname: LBE
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,27 +3,29 @@
|
|||
_pkgname=LEA
|
||||
_pkgver=3.14.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=3.14.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='LEA: an R package for Landscape and Ecological Association Studies'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="an R package for Landscape and Ecological Association Studies"
|
||||
arch=(x86_64)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-3.0-only')
|
||||
depends=(
|
||||
lapack
|
||||
r
|
||||
)
|
||||
optdepends=(
|
||||
r-knitr
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('611918debc6f25f2cc7277f77979a3e8352c517b63bea56626c6fd9c2ecb14e6')
|
||||
md5sums=('e32cbc2a97921f9b911eef1a5d1ef3d7')
|
||||
b2sums=('6c39d143ccc7213006f7fca3221ecef3aff81957cce5999c3e417cb007afb011ff54c90701a80dbd4d7e6671f86a8cf03575a154186b3765dd57bce68737fee9')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,12 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: LEA_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/LEA
|
||||
- source: rpkgs
|
||||
pkgname: LEA
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
- source: alpmfiles
|
||||
pkgname: lapack
|
||||
filename: usr/lib/liblapack\.so\.([^.]+)
|
||||
repo: extra
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=maCorrPlot
|
||||
_pkgver=1.72.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.72.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Visualize artificial correlation in microarray data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Visualize artificial correlation in microarray data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('eb8ecf43408aca3669ffdb109f4d4bedf3962cb08760ff27a68d6ceb5226f23e')
|
||||
md5sums=('4d4be51b04e4ff3e09aff6643eeed215')
|
||||
b2sums=('1739fc5d560b984619dcb71eba5d631aba3c5b471c42643f9df08781a836b1fedf408a86d7719de09087925beb70beb1b0245752eaf2aa034b5017119587c2b3')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: maCorrPlot_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/maCorrPlot
|
||||
- source: rpkgs
|
||||
pkgname: maCorrPlot
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=MantelCorr
|
||||
_pkgver=1.72.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.72.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Compute Mantel Cluster Correlations'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Compute Mantel Cluster Correlations"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('408a025f3d22856315b18ec4ddc99fe1fc6dfdfca7bcb8b39c8754cd3778f64b')
|
||||
md5sums=('7ef5ee0a329a4cf218c340e9289fea32')
|
||||
b2sums=('3b7455388ae2f355e5334e7a236325310d4088e7ae8f8cee64d30037abc78f190f002fd2341807722e03cf85b52e717ed585d94c9aedc28354f08f54623481f2')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: MantelCorr_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MantelCorr
|
||||
- source: rpkgs
|
||||
pkgname: MantelCorr
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=marima
|
||||
_pkgver=2.2
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=2.2
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=2
|
||||
pkgdesc='Multivariate ARIMA and ARIMA-X Analysis'
|
||||
arch=('any')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Multivariate ARIMA and ARIMA-X Analysis"
|
||||
arch=(any)
|
||||
url="https://cran.r-project.org/package=$_pkgname"
|
||||
license=('GPL-2.0-only')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a6328dfcd3463f80921629e884052901f26740601f4b4f50a4a200924782db0e')
|
||||
md5sums=('d4ed509e53612f09c04da251444481b1')
|
||||
b2sums=('6de2b81e045d2e9cfd68051265688e886a01040182440bcd06cf770cbf4a778348324b562249c29108ad9e7a708dbbb5a514d4ed7b5e6215938a0d2dccac1516')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,9 +1,14 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
update_aur_repo()
|
||||
|
|
|
|||
|
|
@ -1,12 +1,10 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: sukanka
|
||||
email: su975853527@gmail.com
|
||||
post_build_script: |
|
||||
git_pkgbuild_commit()
|
||||
update_aur_repo()
|
||||
- github: sukanka
|
||||
email: su975853527@gmail.com
|
||||
update_on:
|
||||
- regex: marima_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=marima
|
||||
- alias: r
|
||||
- source: rpkgs
|
||||
pkgname: marima
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=MassArray
|
||||
_pkgver=1.54.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.54.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Analytical Tools for MassArray Data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
pkgdesc="Analytical Tools for MassArray Data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('GPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('cf223329fed02269a02ba48c62ce3dc34f1968e75b1ff2b149575416770e2bb4')
|
||||
md5sums=('028fea456ce2e5b3820ad6dc0d1989c1')
|
||||
b2sums=('8db9948e51b012017d3b3cf0b958eb4e57da4748597bc5c361587c08991d1856089fbf76c62e01327928c003bde4c504d8b538165e4ee14b27ade8c25be4e310')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: MassArray_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MassArray
|
||||
- source: rpkgs
|
||||
pkgname: MassArray
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=matchBox
|
||||
_pkgver=1.44.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.44.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('3191d06eae4802bcd3e3eab87a15c2ddaae29c46bf1907026cfa8782e86eb1a0')
|
||||
md5sums=('b6e4b10ee38f433d1bce146a089a44ec')
|
||||
b2sums=('3d3ea47607e5966961c870ec60a51cd1cedfd401a2ad81f07b5a869363d86e3fc7d358b17a574ea8222fece45d0b8cdcf63486a0979a7ab2f00fb78941019c13')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: matchBox_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/matchBox
|
||||
- source: rpkgs
|
||||
pkgname: matchBox
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=MBAmethyl
|
||||
_pkgver=1.36.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.36.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Model-based analysis of DNA methylation data'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
pkgdesc="Model-based analysis of DNA methylation data"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('Artistic-2.0')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('87b0b81aec31c0b902ad24e2c2c7f5b281d9afb7f5019459b69be7df36155c08')
|
||||
md5sums=('0b6ac0d76525c156606d08bcbf606709')
|
||||
b2sums=('f1880203f354e8aa83147577c8d7f4a89d575ae5cec326704acac8a1df208af46068b1a8b1a64b8243ec00275fe7762c662d567f90fe6e4b9032f4589fbb6f1a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: MBAmethyl_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MBAmethyl
|
||||
- source: rpkgs
|
||||
pkgname: MBAmethyl
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,24 +3,25 @@
|
|||
_pkgname=MeasurementError.cor
|
||||
_pkgver=1.74.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=1.74.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Measurement Error model estimate for correlation coefficient'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
pkgdesc="Measurement Error model estimate for correlation coefficient"
|
||||
arch=(any)
|
||||
url="https://bioconductor.org/packages/$_pkgname"
|
||||
license=('LGPL-2.0-or-later')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('2e7631fb9bbf651651d983066173f235aa668638ab882f1e983df16b0468ec42')
|
||||
md5sums=('7de3f5ca3749a7b1e80fdfa66204a252')
|
||||
b2sums=('afa6d335a3188a6b90cc665031e876e7514e8486d851c84a0806f01fb69c36f44a6bb9543511d352123768353831072d91f976476bd639cd270a7f8181d739b1')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: MeasurementError.cor_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MeasurementError.cor
|
||||
- source: rpkgs
|
||||
pkgname: MeasurementError.cor
|
||||
repo: bioc
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue