From ffddf9ee945384f71894934183dba0581806a964 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Mon, 18 Sep 2023 18:06:08 +0300
Subject: [PATCH] r-mnp: init, checkdependency of r-prediction, which is
 dependency of r-margins, which is checkdependency of r-estimatr, which is
 checkdependency of r-performance

---
 BioArchLinux/r-mnp/PKGBUILD   | 39 +++++++++++++++++++++++++++++++++++
 BioArchLinux/r-mnp/lilac.py   | 14 +++++++++++++
 BioArchLinux/r-mnp/lilac.yaml | 16 ++++++++++++++
 3 files changed, 69 insertions(+)
 create mode 100644 BioArchLinux/r-mnp/PKGBUILD
 create mode 100644 BioArchLinux/r-mnp/lilac.py
 create mode 100644 BioArchLinux/r-mnp/lilac.yaml

diff --git a/BioArchLinux/r-mnp/PKGBUILD b/BioArchLinux/r-mnp/PKGBUILD
new file mode 100644
index 0000000000..87318cbec7
--- /dev/null
+++ b/BioArchLinux/r-mnp/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=MNP
+_pkgver=3.1-4
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Fitting the Multinomial Probit Model"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL)
+depends=(
+  lapack
+  r
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('7613e5396a2a420162e9bb0959985498')
+sha256sums=('4913450e88ed1ed2d048b4fdbc92e31100eb906a87f1f6ad5c45773656e2aed7')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}
diff --git a/BioArchLinux/r-mnp/lilac.py b/BioArchLinux/r-mnp/lilac.py
new file mode 100644
index 0000000000..b5cdb057c5
--- /dev/null
+++ b/BioArchLinux/r-mnp/lilac.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-mnp/lilac.yaml b/BioArchLinux/r-mnp/lilac.yaml
new file mode 100644
index 0000000000..1b257589ab
--- /dev/null
+++ b/BioArchLinux/r-mnp/lilac.yaml
@@ -0,0 +1,16 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: MNP
+  repo: cran
+  md5: true
+- alias: r
+- source: alpmfiles
+  pkgname: lapack
+  filename: usr/lib/liblapack\.so\.([^.]+)
+  repo: extra