# maintainer: Guoyi
pkgname=freebayes
pkgver=1.3.6
pkgrel=1
pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping"
arch=('x86_64')
url="https://github.com/freebayes/freebayes"
license=('MIT')

depends=('tabixpp' 'vcflib' 'vcftools' 'samtools' 'parallel' 'bc')
makedepends=('ninja' 'meson' 'git' 'cmake' 'make')
optdepends=()

source=(git+https://github.com/freebayes/freebayes.git#tag=v${pkgver})
noextract=()
sha256sums=('SKIP')
prepare() {
  cd "$pkgname"
  git submodule update --init --recursive
}
build() {
  cd "$pkgname"
  rm -rf build
  mkdir build
  meson --prefix=/usr --buildtype=debug build
  cd build
  ninja -v
}

package() {
  cd "$pkgname-$pkgver"
  install -Dm 755 build/freebayes $pkgdir/usr/bin/freebayes
}