mirror of
https://github.com/BioArchLinux/Packages.git
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44 lines
1.2 KiB
Bash
44 lines
1.2 KiB
Bash
# Maintainer: Guoyi
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pkgname=arb-bio
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pkgver=7.0
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pkgrel=1
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pkgdesc="C++ library and cmdline tools for parsing and manipulating VCF files https://10.1101/2021.05.21.445151"
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arch=('x86_64')
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url="http://www.arb-home.de/"
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license=('UNKNOWN')
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depends=('lynx' 'imake' 'time' 'libxslt'
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)
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makedepends=('xerces-c' 'clang' 'libtirpc' 'boost')
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source=("${pkgname}-${pkgver}.tgz::http://download.arb-home.de/production/2021_09_16/arb-r18733-source.tgz"
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)
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md5sums=('a491b52f74fc4ddbd0ec373311ece8a0')
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prepare(){
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mv arbsrc_* ${pkgname}-${pkgver}
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cd ${srcdir}/${pkgname}-${pkgver}
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cp config.makefile.template config.makefile
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sed -i 's|-lCORE|-lCORE -ltirpc|g' Makefile
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# If use gcc, also fail.
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# gccver=$(gcc --version | grep ^gcc | sed 's/^.* //g')
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# sed "s|9.3.0|9.3.0 ${gccver}|g" -i Makefile
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# sed -i 's/LOOP_VECTORIZED//g' CORE/arb_strarray.cxx
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# sed -i 's|LOOP_VECTORIZED=2\[||g' MULTI_PROBE/MP_sonde.cxx
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}
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build() {
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cd $srcdir/${pkgname}-${pkgver}
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export ARBHOME=${srcdir}/${pkgname}-${pkgver}
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export PATH=$ARBHOME/bin:$PATH
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export XINCLUDES="-I/usr/include -I/usr/include/tirpc"
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export CC=clang
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export CXX=clang++
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make
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make all
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}
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package() {
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cd $srcdir/arbsrc_*
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make install DESTDIR="$pkgdir"
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}
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