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53 lines
1.2 KiB
Bash
53 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=cliqueMS
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-or-later')
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depends=(
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r-coop
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r-igraph
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r-matrixstats
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r-msnbase
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r-rcpp
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r-slam
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r-xcms
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)
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makedepends=(
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r-bh
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r-rcpparmadillo
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocparallel
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r-camera
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('4161bbb24c1fa3fdf7bc9b558f8c435f')
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b2sums=('f29760ecfe507e5c4401ad56c7bcdfa37ca535261e20c17cbc4889fd739278aa0b4d333c97d5578b075005f26a30f2be0c56ad15e6dddc4af58bce53e631c124')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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