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27 lines
842 B
Bash
27 lines
842 B
Bash
# Maintainer: Malacology <guoyizhang at malacology dot com>
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# Contributor: Malacology <guoyizhang at malacology dot com>
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pkgname=phylonet-hmm
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_installname=PhyloNet
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pkgver=0.1
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pkgrel=2
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depends=(
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'java-runtime'
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)
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makedepends=('ant')
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pkgdesc="An HMM-based comparative genomic framework for detecting introgression in eukaryotes"
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arch=('x86_64')
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url="https://bioinfocs.rice.edu/node/108"
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license=('GPL')
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source=("https://bioinfocs.rice.edu/sites/g/files/bxs266/f/phmm-0.1.tar_0.bz2")
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sha256sums=('a05afde10e6cef5d3b2901c2258dbc11d93f02b2869c8373e678f0d0fdecd8f2')
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build(){
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cd ${srcdir}/phmm-${pkgver}
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ant
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}
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package() {
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cd ${srcdir}/phmm-${pkgver}
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install -Dm755 dist/lib/phmm.jar ${pkgdir}/usr/share/${pkgname}/${pkgname}.jar
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mkdir -p ${pkgdir}/usr/share/${pkgname}/templates
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mv templates/* "${pkgdir}"/usr/share/"${pkgname}"/templates
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}
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