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42 lines
1.4 KiB
Bash
42 lines
1.4 KiB
Bash
# Maintainer: Michael Schubert <mschu.dev at gmail>
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# Contributor: Abhishek Dasgupta <abhidg@gmail.com>
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# Contributor: Damir Perisa <damir.perisa@bluewin.ch>
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pkgname=phylip
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pkgver=3.698
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pkgrel=1
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pkgdesc="A collection of programmes for evolutive genetics and inferring phylogenies"
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arch=('i686' 'x86_64')
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url="http://evolution.genetics.washington.edu/phylip.html"
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source=(http://evolution.gs.washington.edu/phylip/download/phylip-$pkgver.zip
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phylip-3.698-makefile.patch
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phylip-3.698-fno-common.patch)
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optdepends=('java-runtime')
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license=('custom')
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sha256sums=('cb12e5105d25872eed705d243ca32b400e180d38c3437d58335f11a431df0e46'
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'91779c722959b7e08f4e3e03e9c1cc14c4a81d152e46d4a6b30d0dd09e276637'
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'd2638f99a6cb1e893aa6c362f906d5fca94700e0e4d50392abba853be8f0fff3')
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prepare() {
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cd "$srcdir"/$pkgname-$pkgver
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# patches from gentoo ebuild: https://gitweb.gentoo.org/repo/gentoo.git/plain/sci-biology/phylip/files
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patch -p1 < ../phylip-3.698-makefile.patch
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patch -p1 < ../phylip-3.698-fno-common.patch
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}
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build() {
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cd "$srcdir"/$pkgname-$pkgver/src
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make -f Makefile.unx all
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}
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package() {
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cd "$srcdir"/$pkgname-$pkgver/src
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make -f Makefile.unx put
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cd "$srcdir"/$pkgname-$pkgver
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mkdir -p "$pkgdir"/usr/{lib,bin,share/phylip}
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rm -rf exe/testdata
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mv exe/factor{,-phylip}
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mv exe/*.so "$pkgdir"/usr/lib/
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mv exe/font* "$pkgdir"/usr/share/phylip/
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mv exe/* "$pkgdir"/usr/bin
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}
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