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https://github.com/BioArchLinux/Packages.git
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43 lines
1 KiB
Bash
43 lines
1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=DELocal
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_pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Identifies differentially expressed genes with respect to other local genes"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=(MIT)
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depends=(
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r-deseq2
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r-dplyr
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r-ggplot2
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r-limma
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r-matrixstats
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r-reshape2
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r-summarizedexperiment
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)
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optdepends=(
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r-biomart
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r-knitr
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r-pcredux
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r-rmarkdown
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r-stringr
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('6f595f5306f040c92e53f70db5fb4d81')
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sha256sums=('85e1ceb9812f18727fa12bbc17691e3bfe89dc6686900d14245a773a1cce1395')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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