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39 lines
1,007 B
Bash
39 lines
1,007 B
Bash
# Maintainer: Bipin Kumar <kbipinkumar@pm.me>
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pkgname=mutmap
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_name=MutMap
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pkgver=2.3.9
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pkgrel=1
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pkgdesc='Pipeline to identify causative mutations responsible for a phenotype. https://doi.org/10.7717/peerj.13170'
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arch=('x86_64')
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url="https://github.com/YuSugihara/MutMap"
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license=('GPL')
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depends=(
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'bwa'
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'samtools'
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'snpeff'
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'bcftools'
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'trimmomatic'
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'python-matplotlib'
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'python-numpy'
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'python-pandas'
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'python-seaborn'
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)
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makedepends=(
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'python-setuptools'
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'cython'
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'python-setuptools-scm'
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)
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options=(!emptydirs)
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source=($_name-$pkgver::"https://github.com/YuSugihara/MutMap/archive/refs/tags/v$pkgver.tar.gz")
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sha256sums=('3ac191b3f0d6348072547fcb619ab9feffa222c6270f6cc526b0ac511217d733')
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build() {
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cd "$srcdir/$_name-$pkgver"
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python setup.py build
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}
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package() {
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cd "$srcdir/$_name-$pkgver"
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python setup.py install --root="$pkgdir/" --optimize=1 --skip-build
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}
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