mirror of
https://github.com/BioArchLinux/Packages.git
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55 lines
1.3 KiB
Bash
55 lines
1.3 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=contiBAIT
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_pkgver=1.30.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Improves Early Build Genome Assemblies using Strand-Seq Data"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('BSD-2-Clause')
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depends=(
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r-bh
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r-biocgenerics
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r-biocparallel
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r-clue
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r-colorspace
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r-data.table
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r-diagram
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r-dnacopy
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r-exomecopy
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r-genomicalignments
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r-genomicfiles
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r-genomicranges
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r-ggplot2
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r-gplots
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r-gtools
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r-iranges
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r-rcpp
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r-reshape2
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r-rsamtools
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r-rtracklayer
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r-s4vectors
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r-tsp
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)
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optdepends=(
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r-biocstyle
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('8297fd66bbfcd997be0f23cf31fcd644')
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b2sums=('dfc4c8db3f7fb9af6c0d137f125c25c1650925724c540a4c387f40c9e47545e515aa189815bb2b9de7342432acc8148391d3e85c4cb5a61c1718561b232e6082')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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