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35 lines
1.1 KiB
Bash
35 lines
1.1 KiB
Bash
# Maintainer: Clint Valentine <valentine.clint@gmail.com>
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pkgname=biobambam
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pkgver=2.0.185_release_20221211202123
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pkgrel=1
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pkgdesc="BAM file pre-processing utilities for bioinformatics."
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arch=('x86_64')
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url="https://github.com/gt1/biobambam2"
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license=('GPL3')
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makedepends=('libmaus' 'autoconf' 'make' 'boost')
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source=(https://gitlab.com/german.tischler/biobambam2/-/archive/${pkgver//_/-}/${pkgname}2-${pkgver//_/-}.tar.gz
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gcc13.patch::https://gitlab.com/german.tischler/biobambam2/-/commit/67ba5f1d097d8ec33805afb9217632bb7bd4343d.patch)
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sha256sums=('e405421e869ac7220c3a7e5da0d24a3c7b4c7b1807e044a439fe68efc88a1f2a'
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'4945978c194807b149f9c82f709db1fce62340867f87ede5a587ef2247c39827')
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prepare() {
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cd "${srcdir}"/"${pkgname}2"-"${pkgver//_/-}"
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patch -p1 < $srcdir/gcc13.patch
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}
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build() {
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cd "${srcdir}"/"${pkgname}2"-"${pkgver//_/-}"
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autoreconf -i -f
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./configure --prefix="${pkgdir}"/usr --with-libmaus2=${LIBMAUSPREFIX}
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}
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check() {
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cd "${srcdir}"/"${pkgname}2"-"${pkgver//_/-}"
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make test
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}
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package() {
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cd "${srcdir}"/"${pkgname}2"-"${pkgver//_/-}"
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make install
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}
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