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49 lines
1.1 KiB
Bash
49 lines
1.1 KiB
Bash
# system requirements: JAGS 4.0.0
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=HiLDA
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=1.20.0
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pkgrel=1
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pkgdesc='Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-abind
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r-biocgenerics
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r-biostrings
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r-bsgenome.hsapiens.ucsc.hg19
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r-cowplot
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r-forcats
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-r2jags
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r-rcpp
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r-s4vectors
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r-stringr
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r-tidyr
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r-txdb.hsapiens.ucsc.hg19.knowngene
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r-xvector
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('f333ef857a85802e67598617e86844511bc18913c03f7a3ba12e9679b632796c')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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