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70 lines
1.5 KiB
Bash
70 lines
1.5 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=phenomis
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_pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Postprocessing and univariate analysis of omics data"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('CECILL-2.0')
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depends=(
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r-biobase
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r-biodb
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r-biodbchebi
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r-data.table
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r-futile.logger
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r-ggplot2
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r-ggrepel
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r-htmlwidgets
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r-igraph
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r-limma
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r-multiassayexperiment
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r-multidataset
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r-plotly
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r-pmcmrplus
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r-ranger
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r-rcolorbrewer
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r-ropls
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r-summarizedexperiment
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r-tibble
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r-tidyr
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r-venndiagram
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocgenerics
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r-biocstyle
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r-biosigner
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r-cll
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r-knitr
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r-omicade4
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
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"$_pkgname-LICENSE::http://www.cecill.info/licences/Licence_CeCILL_V2-en.txt")
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md5sums=('6fc3be4aed9fead1f2038fb3d2837854'
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'599cf91b33571e942d3ba5f9623b8011')
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sha256sums=('2f002955d854868a2fd87bcea8902662a4f7089f07d83b490403d00034e1d9fd'
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'0451b634c56ded90b29cd5e40295bcf24bd5224f5ffd7c5f1458535eb90ba85f')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -Dm644 "$_pkgname-LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
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}
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