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53 lines
1.2 KiB
Bash
53 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=biovizBase
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_pkgver=1.54.0
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pkgname=r-${_pkgname,,}
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pkgver=1.54.0
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pkgrel=1
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pkgdesc='Basic graphic utilities for visualization of genomic data.'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-annotationdbi
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r-annotationfilter
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r-biocgenerics
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r-biostrings
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r-dichromat
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r-ensembldb
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r-genomeinfodb
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-hmisc
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r-iranges
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r-rcolorbrewer
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r-rlang
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r-rsamtools
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r-s4vectors
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r-scales
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r-summarizedexperiment
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r-variantannotation
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)
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optdepends=(
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r-bsgenome
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r-bsgenome.hsapiens.ucsc.hg19
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r-ensdb.hsapiens.v75
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r-rtracklayer
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r-runit
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r-txdb.hsapiens.ucsc.hg19.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('e6fb8ba6cfab2e5c75036e2ccbf17f1a1fdb8949c183e4aaf221a1a4e680903c')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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