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62 lines
1.3 KiB
Bash
62 lines
1.3 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=ggkegg
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_pkgver=1.0.5
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="KEGG pathway visualization by ggplot2"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=(MIT)
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depends=(
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r-annotationdbi
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r-biocfilecache
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r-cairo
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r-data.table
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r-dplyr
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r-getoptlong
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r-ggplot2
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r-ggraph
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r-igraph
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r-magick
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r-org.hs.eg.db
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r-patchwork
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r-shadowtext
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r-stringr
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r-tibble
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r-tidygraph
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r-xml
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-bnlearn
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r-clusterprofiler
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('9adf4d26a8390b425194f9e69108682e')
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sha256sums=('3a845920ca7febe7f59b2029d43f71a420fd4d8831a49daa765b6d0c0a344ecf')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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