Aim to be the bioinformatics repository with more and newer packages
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2021-11-04 08:23:31 +08:00
.github Update FUNDING.yml 2021-08-24 17:48:34 +08:00
beast beast: auto updated to 1.10.4-6 2021-08-26 03:37:24 +08:00
beast2 beast2: auto updated to 2.6.6-1 2021-08-26 11:29:28 +08:00
clustal-omega clustal-omega: auto updated to 1.2.4-3 2021-11-02 04:44:17 +08:00
clustalw clustalw: auto updated to 2.1-3 2021-11-02 04:43:05 +08:00
clustalx clustalx: auto updated to 2.1-3 2021-11-02 04:41:39 +08:00
dnastar Update PKGBUILD 2021-10-31 12:01:39 +00:00
easycodeml mod lilac.yaml 2021-08-26 23:37:25 +08:00
fasttree fasttree: auto updated to 2.1.9-1 2021-11-03 02:36:20 +08:00
figtree figtree: auto updated to 1.4.4-2 2021-11-03 03:11:25 +08:00
free-delta change the source 2021-11-02 19:55:48 +00:00
gblocks gblocks: auto updated to 0.91b-2 2021-11-03 02:45:50 +08:00
gconf gconf: auto updated to 3.2.6+11+g07808097-11 2021-11-04 07:45:32 +08:00
iqtree Update PKGBUILD 2021-11-03 22:41:31 +00:00
jane jane: auto updated to linux.tar.gz-1 2021-11-03 02:32:05 +08:00
jmodeltest jmodeltest: auto updated to 2.1.10r20160303-2 2021-11-01 01:43:33 +08:00
libdivsufsort libdivsufsort: auto updated to 2.0.1-4 2021-08-29 17:09:57 +08:00
mafft adjust mafft 2021-08-10 22:23:22 +08:00
mega add depen 2021-11-03 23:41:51 +00:00
mesquite mesquite: auto updated to 3.6-3 2021-11-03 03:10:52 +08:00
modeltest-ng modeltest-ng: auto updated to 0.1.7-2 2021-08-26 11:33:58 +08:00
mrbayes mrbayes: auto updated to 3.2.7-2 2021-08-26 11:35:39 +08:00
mrbayes-mpi mrbayes-mpi: auto updated to 3.2.7-3 2021-08-26 11:30:51 +08:00
muscle muscle: auto updated to 3.8.1551-2 2021-11-03 02:31:38 +08:00
nona nona: auto updated to 2.0-2 2021-08-26 02:09:22 +08:00
open-delta open-delta: auto updated to 1.02-2 2021-11-04 08:23:31 +08:00
paup paup: auto updated to 4a168-2 2021-11-03 02:32:32 +08:00
phylip phylip: auto updated to 3.698-2 2021-11-03 02:35:46 +08:00
phylobayes phylobayes: auto updated to 4.1c-1 2021-11-04 05:47:54 +08:00
phylobayes-mpi phylobayes-mpi: auto updated to 1.8c-2 2021-08-26 03:26:26 +08:00
phylonet phylonet: auto updated to 3.8.3-2 2021-11-03 05:56:24 +08:00
phylonium phylonium: auto updated to 1.5-2 2021-08-29 17:24:31 +08:00
phylosuite phylosuite: auto updated to 1.2.2-2 2021-11-01 04:11:37 +08:00
phyml phyml: auto updated to 1:3.3.20211021-2 2021-11-03 03:09:45 +08:00
pibuss pibuss: auto updated to 1.4-2 2021-11-04 06:57:47 +08:00
popart popart: auto updated to 20190715.150937-1 2021-11-01 09:12:41 +08:00
qspec qspec: auto updated to 0.2-3 2021-10-31 17:40:49 +08:00
raxml raxml: auto updated to 8.2.12-2 2021-08-29 16:52:41 +08:00
raxml-mpi raxml-mpi: auto updated to 8.2.12-2 2021-08-29 16:48:03 +08:00
raxml-ng try to fix 2021-11-03 22:46:01 +00:00
raxmlgui update 2021-10-10 22:34:19 +01:00
seaview try to fix the url error via href 2021-11-04 00:03:48 +00:00
seqencematrix seqencematrix: auto updated to 1.9-2 2021-08-26 03:36:13 +08:00
spread try to fix the url error via href 2021-11-04 00:08:23 +00:00
spread3 try to fix the url error via href 2021-11-04 00:06:59 +00:00
tempest tempest: auto updated to 1.5.3-2 2021-11-03 05:56:58 +08:00
tiger tiger: auto updated to 1.02-2 2021-08-26 03:36:35 +08:00
tnt try to fix the url error via href 2021-11-04 00:10:37 +00:00
tracer tracer: auto updated to 1.7.2-1 2021-11-01 02:03:42 +08:00
treemap add treemap 2021-11-02 21:48:53 +00:00
ugene update depen 2021-10-14 16:03:45 +01:00
winclada winclada: auto updated to 1.6.1-2 2021-08-26 02:12:59 +08:00
CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md 2021-08-23 17:14:10 +08:00
CONTRIBUTING.md translate CONTRIBUTION.md 2021-08-23 20:56:20 +08:00
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Packages

Scripts of Lilac Repo, including PKGBUILD, lilac.yaml and lilac.py

Aim

Current goal

  • Migrate about 50 packages from aur_build to lilac.
  • Expansion of the users' awareness of this repository.
  • Include more popular packages for biologists.

Todo

Now sponsors are still needed to promote the net speed of this repository. The funding will be used to buy faster a VPS service and a domain name. Now the repository is hosted in 1M VPS in Shenzhen, China and the domain is malacology.net. bioarchlinux.org or bioarchlinux.net should be bought and VPS is better to locate in Hongkong, China or Singapore considering the internet block and internet downloading speed.

Or some undergraduate students can hold a National Students' Innovation Entrepreneurship Training Program in his/her university to win the funding for this project. starsareintherose can give help to the undergraduate, considering her previous national level NSIETP.

Invovled

Todo List

All the todo list for this repository is fixed at Projects. For contributing to new packages, see packages todo list, the in progress column shows the packages which are needed to be fixed, and the todo list column contains the packages which are needed to build and update to this repository. For fixing the bugs, see the bug todo list, the issues reporting bugs will be moved to the todo column of this project.

Pull Request

For contributing to this repository, we would like to invite you as a member of this organization. About the details, see the English contribution guide or the Chinese contribution guide.

Discussions

When you meet some difficulty in writing PKGBUILD, lilac.yaml and so on. There are two web pages that you could find help, one is bbs.archlinux.org and another is our discussions.

Periodical Flags

When almost all packages are uploaded and fixed, the periodical flags would help this community work better. Some potential flags will be listed on the discussions and users can comment on it. After merging some comments, the team can publish announcements on discussions to show the tasks plan.

Bug Reports & Package Request

For bug reports, just posts some issues with a detailed output log and give us detailed information of your working environment, we will fix it. It's almost the same as the request, give details about the packages information following the template.

Contact

If you would like to join us, try to contact starsareintherose. Better to introduce what you want to do in our organization.

Usage

Add the fllowing to the /etc/pacman.conf

[BioArchLinux]
Server = https://repo.malacology.net/

Then import GPG key

$ pacman-key --recv-keys B1F96021DB62254D
$ pacman-key --finger B1F96021DB62254D
$ pacman-key --lsign-key B1F96021DB62254D

License and Code of Conduct

License is GPL version 3 and Code of Conduct is here.

Acknowledgments

Thanks go to lilydjwg, the creator of lilac, for her help on lilac. It's grateful for all the users for using this repository and supporting BioArchLinux.